Hippoglossus stenolepis (Pacific halibut): 118118792
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Entry
118118792 CDS
T08308
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118118792
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
hsp04812
]
118118792
Cytoskeleton proteins [BR:
hsp04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
118118792
Intermediate filaments
Intermediate filament-binding proteins
118118792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
PH_11
CAMSAP_CH
PMC2NT
SOS1_NGEF_PH
FERM_C1_MyoVII
Motif
Other DBs
NCBI-GeneID:
118118792
NCBI-ProteinID:
XP_035028037
LinkDB
All DBs
Position
2:complement(30917346..30945152)
Genome browser
AA seq
2351 aa
AA seq
DB search
MMTTVAAEYDHMELQQQYSSSNDTVNNRWDDDWDNENSSARLFERSRIKALADEREAVQK
KTFTKWVNSHLSRVSCRITDLYMDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVD
KALQFLKEQRVHLENMGCHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKRSAKD
ALLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNA
FNLAEQHLGLTRLLDPEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNA
IETEKMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFT
EKGNLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRTELIRQ
EKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETDISAYEER
VQAVVAVAKELEAEHYHDIKRITARKDNVIRLWEYLLELLKARRLRLEMNLGLQRVFQEM
LYIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIGIQADRVKAVTTNANKHSGN
DSGYKPCDPQVIQDRVSHLEFSYQELIQLAAERRARLEESRRLWKFYWEMAEEEGWIREK
EQILSSLEHGKDLTGALRLLSQQRALEDEMTGRAGHLHHTIAEGQAMVEAGHFGATRIQE
RIADLQAQWTALEQLAAARKKRLEQALALHQFQTDADDVDAWTLDALRIVSSGETGHDEF
STQALVRKHKDAAAEVVSYRPVIDLLHEQATSLPKEEAESEEVRGRLAGIEERYKEVAEL
TKLRKQALQDALALYKMFSEADACEVWIDEKEQWLNSLEIPEKLEDLEVIQHRFESLEPE
MNNQASRVAVVNQIARQLMHNGHPSEKDIKTQQDKLNNRWSQFRDLVDQKKESLNSALGV
QNYHLDCNETKSWIKEKTKVIESTQELGNDLTGVMALQRKLTGMERDLAAIEDKLGDLRG
EAQRLAEEHPDQAKAITGRLAEINAVWEEMKNTLKNREESLGEARKLQQFLRELDDFQSW
LSRTQTAIASEDMPNTLAEAEKLMAQHEGIKNEIQNYEEDYQKMRDMGEMVTQGQTDAQY
MFLRQRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEM
PSTLEGAEAAIRKQEDFMTTMDANEDKINGVVEAGRRLASDGNIDAERIQERVASIDERH
KKNREAAVELLMRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMTYDEARNLHSKWLKHQ
AFMAELQSNKEWLDKIQKEGMMLVSEKPETEAVVKEKLSALHAMWEELESTTQTKAQCLF
DANKAELFTQSCTDLDKWLVGLEGQIQSDDYGKDLTSVNILLKKQQMLENQVEVRQKEVV
ELQSQVKALGQEVKDADEVDGRRQLVESKFQELLEPLRRRRNFLVESREVHQFNRDVEDE
ILWVQERMPVATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQPRIDDILERSQSLLRDESS
NTDLIRQRLAELQQLWRQHMEEAECRHGRLEEAHKAQQYYFDAAEAEAWMSEQELYMMSE
EKAKDELSAVTMLKKHQIVELAVEDYAETVHQLSKTSRGLVSDAHPESERISMRQSQVDK
LYAGLKDLSEERRGKLDERLRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQE
RFREFARDTGNIGQERVDAVNRLADELINAGHGDAATVAEWKDGLNEAWADLLELIDTRT
QILAASFELHKFYNDAKEILGRILDKQKKLPEEVGRDQNTVETLQRMHTTFEHDIQALGT
QVRQLQDDAVRLQSAYAGDKADDIQRRECEVLEAWRSLLEACDGRRLRLLDTGDKFRFFS
MVRDLMLWMDDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTACIELGKALL
ARKHYASEEIKEKLLQLTDKRKEMIDKWEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEP
YLSSREMGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTLELLEVRRQQEEEERRR
KPPSPEPPLIQHDESQQHSGVIVQNGLASDHDSPRDGEDAADLVNGVAERSSKEPSPTPS
PTSGRKSKTSLSSTLPSKTQESPPSQLEGLLHRKHEWEGHNKKASNRSWHNVYCVINNQE
IGFYKDTKAVAQGVPYHNEVPISLKEAACDVASDYKKKKHVFKLRVNDGNEFLFQAKDEE
EMSTWIQAILNTSAADRSDVQGSLPGTPASGRAHTLPAAVTLTTESSPGKREKDKEKEKE
KRFSLFSKKKQ
NT seq
7056 nt
NT seq
+upstream
nt +downstream
nt
atgatgacgacggtggccgccgagtacgaccacatggagctgcagcagcagtacagcagc
agcaacgacacggtcaacaaccgctgggacgacgactgggacaatgagaacagctcggcc
cgcctgttcgagcgctcccgcatcaaggcgctcgcagatgagcgggaggcggtgcagaag
aagaccttcactaaatgggtcaactctcacttgtccagagtctcgtgcagaatcactgat
ctttacatggatctgagagacggacgaatgctcatcaaactgctggaggttctgtcagga
gagagactgccgaagccgaccaaaggtcggatgcgtatccactgtctggagaatgtggac
aaagctctgcagttcctgaaggagcagcgggttcacctggagaacatgggatgtcacgac
attgtggacggaaaccaccgactgacgctcggcctcatctggacaatcatcctccgcttc
cagatccaggacatcagtgtggagactgaagacaacaaagagaagagatcagctaaagac
gctctgctgctgtggtgtcagatgaagacggcagggtatcccaacgtgaacattcacaac
ttcagcaccagctggagagacggaatggcgttcaacgctctgatccacaaacacaggcct
gatctgatcgactttgacaaactgaaaaaatccaacgctcactacaacctgcagaacgct
ttcaacctggcagagcaacacctgggcctcaccaggctgctggaccccgaggacatcagc
gtggaccaccctgatgagaagtcagtcatcacctacgtggtgacgtattatcactatttc
tctaagatgaaggctctgaaggtggagggcaaacgcatcggaaaggttctggacaacgcc
atcgaaacggagaagatgatcgagaagtacgagtctctggcgtcagacctgctggagtgg
atcgaacagaccatcatcatcctcaacaacaggaagttcgccaactctctggtcggagtc
cagcagcagctccaggccttcaacacctaccgcaccgtggagaaacctccaaagttcaca
gagaagggaaacctggaggttcttctcttcaccatccagagtaagatgagagccaacaac
cagaaggtctacatgccccgagagggaaaactcatctctgacatcaacaaggcctgggag
cgactggaaaaggccgagcacgagagggagctggctctgaggacggagctcattcgtcag
gagaaactggaacaactggccagacgcttcgaccgcaaagcggccatgagagagacctgg
ctcagtgagaaccagaggctggtgtcacaggacaactttggattcgaccttcaggctgtc
gaggcggccaccaagaagcatgaggcaattgagacagacatttcagcatacgaggagcgt
gtccaggctgtggttgccgtagcgaaggagctggaggcggagcactaccacgacatcaaa
cgcatcactgccaggaaggacaatgtgatccggctgtgggagtatctactggagctgctg
aaggcccgcagactccggctggagatgaacctgggtctgcagagagtcttccaggagatg
ctgtacatcatggactggatggatgaaatgaagatgctactgctgtcccaggattatggg
aagcatctgttgggtgtggaggacttgctgcaaaaacatgccctggtggaggccgacatc
ggcatccaggctgaccgggtgaaggcggtcaccacaaacgctaacaagcactccggcaac
gacagtggctacaaaccctgcgaccctcaggtcatccaggaccgagtttcccaccttgag
tttagctaccaggagctgatccagctggctgccgagcgtcgcgcccgcctggaggagtcg
cgtcgcctctggaagttctactgggaaatggctgaggaggagggctggatccgtgagaag
gagcagatcctttcttctctcgaacatggcaaggacctgacaggggcgctgcgcctcctc
agccagcagcgtgctctggaggatgagatgaccggccgcgctggacacctccaccacacc
attgctgagggccaagccatggtagaggccggtcactttggtgccactaggattcaggag
cgtattgctgacctgcaggctcagtggacggcactggagcagctggcagccgcgaggaag
aagaggctggagcaggctctggccctgcaccagtttcagactgacgcagatgatgttgat
gcctggacgttagatgccttgcgcattgtctccagtggagagacgggccatgatgagttc
tccacccaggcgctggtcaggaaacataaggatgcagcagcagaggtagttagctaccgg
ccagtcatcgacctacttcacgagcaggctacctccctgcccaaagaggaggcggagtca
gaggaggtgcgtggtcgtctggccggcattgaggagcgctataaggaggtggctgagctg
acaaagctgaggaaacaggcgctgcaggatgctctggcgctctataagatgttcagtgaa
gccgacgcatgtgaggtgtggatcgatgagaaggagcagtggctgaacagcttggagatc
cctgaaaaactggaagaccttgaggttatacagcacaggtttgagagtctagagccagag
atgaacaaccaggcgtctcgtgtcgctgtggtgaaccagatcgcccggcagctgatgcat
aatggtcacccaagtgaaaaggacatcaagacccagcaggacaaactgaacaacaggtgg
agtcagttccgtgacctggtggaccagaagaaggagtccctgaactctgctctgggtgtg
cagaactaccacctcgactgcaacgagaccaagtcctggatcaaagagaagaccaaggtc
atcgagtccacgcaggagctgggcaacgatctcactggtgtcatggccctgcagcgtaaa
ctgaccggtatggagcgtgacttggctgccatcgaggacaaattgggtgacctgcgcggt
gaggcccagcggctggcagaggagcaccccgaccaggctaaggccatcacaggccgtctg
gctgagatcaatgctgtctgggaggaaatgaagaacacactgaagaaccgtgaggagtct
ttgggtgaggcccggaagctgcaacagttcttgcgtgagctggacgatttccagtcgtgg
ctctcccgcactcagaccgccatcgcctcagaggacatgcccaacacgctggctgaggca
gagaagctgatggctcagcatgaaggcatcaagaacgagatccagaactatgaggaggac
taccagaagatgcgggacatgggggagatggtgactcagggccagacagacgctcagtac
atgttcctgcgacagaggctgcaggcgctcgacaccggctggaacgaacttcacaaaatg
tgggagaaccggcagaacctgctgtcccagtcacatgcttaccagctgttcctcagggac
acgaagcaggccgaggccttcctcaacaaccaggagtacgtcctggctcacactgagatg
ccctctactctggaaggtgccgaggccgccatcaggaagcaggaggacttcatgaccacc
atggacgccaacgaagacaagatcaacggtgtggtggaggccggcaggcgcctggcgagc
gacgggaacattgacgccgaacgtatccaggagagagtcgcctccattgacgaaaggcat
aagaagaacagggaggctgctgtggagctgctgatgagactgaaggacaacagagacctg
cagaagttcctgcaggactgtcaggagctgtctctgtggatcaacgagaagatgctcaca
gcgcaggacatgacgtacgacgaggccaggaacctacacagcaagtggctgaagcaccag
gccttcatggccgaactgcagtccaataaagagtggctggacaagatccagaaggaaggc
atgatgctggtgtcagagaaaccggagacggaggcggtggtgaaggagaagctgtcagcg
ctccacgccatgtgggaggagttagagtcgaccacgcagacaaaggctcagtgcctgttc
gatgccaacaaggccgagctgttcactcaaagctgcaccgacctcgacaagtggctcgtt
ggtctcgagggtcagatccagtctgacgactacggcaaagatctgacctctgtcaacatc
ctgctcaagaaacagcagatgctggagaaccaggtggaggtgcgtcagaaggaggtggtg
gagctgcagagccaggtgaaggctctgggtcaggaggtgaaggacgctgatgaggtggac
gggcggaggcagctggtggagagtaagttccaggagctgctggagccgctgagacgccgc
aggaacttcttggtggaatcaagagaagttcaccagttcaaccgagatgttgaggatgag
attctgtgggttcaggagcggatgcctgtcgccacgtccaccgaccacggacacaacctg
cagaccgtccagctgctcatcaagaagaaccagactctgcagaaggagatccaaggacat
cagcctcgaatcgatgacatcctggaacgcagtcagagcctgctgcgcgacgagtcctcc
aacaccgacctcatccgtcagcgtctggccgagctgcagcagctgtggcggcagcatatg
gaggaggcggagtgccgacacggccggctggaggaggcccacaaggctcagcagtactat
tttgacgctgccgaggccgaggcgtggatgagcgagcaggagctgtacatgatgtcagag
gagaaggctaaggacgagctgagcgccgtcaccatgttgaagaagcatcagattgtggag
ctggcggtggaggactacgccgagaccgtccaccaactgtcaaagaccagccgaggactg
gtgtccgacgcacacccagagagtgagcggatcagcatgcgtcagtctcaggtggacaaa
ctttacgccggcctgaaggacctgtctgaagagaggcgtggcaaattggacgagaggctc
cgcctcttccagttgaaccgtgaggtcgacgacctcgagcagtggatcgctgagcgggag
gtggtggccgggtcacatgagctgggacaggactacgaacacgtaactatgttacaggaa
cgtttccgggaatttgcccgggacacggggaacatcggtcaggagcgcgtggatgctgtt
aaccgtctggcggacgagctgatcaatgccgggcatggcgacgctgcgactgtggcggag
tggaaagacgggcttaacgaggcctgggccgacctgctggagctcatcgataccaggacg
cagatcctcgctgcctccttcgagctccacaagttctacaacgatgcgaaggagatcctt
gggcgcatcctggacaagcagaagaagctgccggaggaggttggacgagaccagaacacg
gtggagacgctgcagaggatgcacaccaccttcgaacatgacatccaggcgctgggaaca
caggtgaggcagctgcaggacgatgcagtccgccttcagtcggcatatgcgggcgacaaa
gctgacgacatccagcggagggagtgcgaggtgctggaggcctggaggagtctgctggag
gcgtgcgacggacgccggctccgcctcctcgacaccggcgataagttcaggttcttcagc
atggtccgagacctgatgctgtggatggacgacgtgatccgactcatcgaggcccaggag
aaacctagagacgtgtcgtcagtggagctgctgatgaacaaccatcagggcatcaaagcc
gagattgatgcccgaaacgacagcttcaccgcctgcatagagctggggaaagccctgctc
gcccgaaaacactacgcctctgaggagatcaaagagaagctgctgcagctgacggacaag
aggaaagagatgattgacaagtgggaagatcgatgggagtggctacggcttatcctggag
gtgcaccagttctcccgggatgctggcgtcgccgaggcgtggctgctgggtcaggagccc
tacctgtccagcagggagatgggacagagtgtggacgaggtggagaaactcatcaaacgc
cacgaagccttcgagaagtcggccgccacctgggaggaacgtttctcggctctagagcga
ctgaccacgttggagctgttggaggtgcggcggcagcaggaggaggaggagcgcaggagg
aagccgccgtctccagagccgccgctgatccaacacgacgagtcacagcagcacagcggc
gtcatcgttcagaacggactggcgtccgaccacgactctcctcgggacggcgaggacgct
gccgatctggtgaacggcgtggccgagcggagctccaaggagccgagtccgaccccgtcc
ccgacctccggcaggaagagcaagacgagcctgtcgtccacgctgccgtccaaaacccag
gagtctcccccgtctcagctggaggggctcctgcaccgcaaacacgagtgggaggggcac
aacaagaaggcgtccaacaggtcgtggcacaacgtgtactgtgtcatcaacaaccaggaa
ataggtttctacaaggacaccaaggcggtggctcagggcgtcccgtatcacaacgaggtt
cccatcagcctgaaggaggcggcatgcgacgtggcctcagactacaagaagaagaaacat
gtcttcaaactcagagtgaacgatggaaatgagtttctgtttcaagccaaagatgaggag
gagatgagcacctggatccaggccatcctgaacaccagcgctgccgaccgcagcgacgtt
caaggcagcctgcccggcacaccggcgtctggacgagctcacacgctgccggccgccgtc
acactcaccactgagtcgagtcccggaaagagagagaaggacaaggaaaaggagaaagag
aaacgtttcagtctgttcagcaagaagaagcagtag
DBGET
integrated database retrieval system
