Hippoglossus stenolepis (Pacific halibut): 118118848
Help
Entry
118118848 CDS
T08308
Name
(RefSeq) LOW QUALITY PROTEIN: cadherin-1
KO
K05689
cadherin 1, type 1, E-cadherin
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04371
Apelin signaling pathway
hsp04514
Cell adhesion molecules
hsp04520
Adherens junction
hsp05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
118118848
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
118118848
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
118118848
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
118118848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hsp03036
]
118118848
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118118848
04090 CD molecules [BR:
hsp04090
]
118118848
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
118118848
Cell adhesion molecules [BR:
hsp04515
]
Cadherins
Major cadherins
118118848
CD molecules [BR:
hsp04090
]
Proteins
118118848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_pro
CADH_Y-type_LIR
Motif
Other DBs
NCBI-GeneID:
118118848
NCBI-ProteinID:
XP_047198379
LinkDB
All DBs
Position
12:1423863..1443262
Genome browser
AA seq
970 aa
AA seq
DB search
MATAWLAAVGILFVAFQASALETTEEPKCVPGFKSDVLIFRVTRKHLGPGTRLGRVGFND
CTNRTRFLFISNDRRFMVHPDGILMVGRKVFLHEGHLDFFIHIWNSHGKKMTVPVKVVDH
GHHRGHHQGDNRGHHHRTHGHHQQKTHGHYQGKNQGDHHGHPHVHHQEKNHGHHQGKIHG
HHHGQHQRNVEHHLGENRHHNNQHHLNEVDSANNTENATTPEVPVLKFPKSGDGLKRRKR
DWVIPDINVPENNKGPYPLKVSQIRSSEDKVKTISYSITGPGANEPPLGLFTMDRLTGTL
YLTQPLDREKVDRYTFQAHAAVDGSLNAEQPMDIMVIVIDQNDNKPVFDQDTFLGEVXES
SPTGFEVINGQAXVDLDEAXNANSDICXCIVSQDPKXPSGPLFEINPNTGAIRVNARGLD
REKYPKHTLVIEAADXEGNGLTGNAKVIITVTDSNDNPPAFTQSSVSKTYKHTVAENRVD
AXVITMAVTDGDEPHSPAWNAKFKIVDGDPGGLFTVTTGSNKHEGIITTAKGLDFEMIST
LVGCAENDIPFATPLPTATHSGGXTQDVNEAPVFEPVEKFVSKPXNLPVDGDVVHIVXPD
IARKQTVEKYKIISDPAGWLNVAKDTGLIKVKSIMDRESTFVKDSKYTALIGAYDNDDVP
ATGTGTLIIQLEDVNDNAPIIEERTIKVCAYKESARPLSVTDSMDLGFAAPYSVSLQGMS
KTNWTARMNDSKTGIDSNLGTELESGECTVVLRVTDNDVAXADNTAQLXVCDCTGEIVSC
SGRIAGWEQPAHDSGILGGILLLLMLVLLLLLFARWRGGEKKEPFLQDDDIRDNIYYYDY
EGGGEXNDQDYDLSVLHRGLDNRPEVFRNDVMPNFMPAPCTGPRPANPEEIGKFHXXCDD
NLMQLDNDLTAXPHDSLLVFGLXGRWSDAGSLSLNSVEQRDQDYNCLNGRGPAXKKLADM
YGGGEDDDML
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgcttggctcgcggctgtgggcattttattcgtcgcttttcaggcctcagct
ttagagaccacagaggagccaaaatgtgtacctggattcaagtcagatgtgttgatcttc
agagtgaccagaaagcacctggggccgggtacaaggctgggcagagtgggcttcaatgac
tgcacaaaccgcacaagatttcttttcatcagtaatgacagacgtttcatggtccatcca
gatgggatattgatggtagggagaaaggtttttcttcatgaaggacaccttgacttcttt
atccatatttggaactcgcatggtaaaaaaatgacagttcctgtcaaggtagtggaccat
ggacatcaccgtgggcatcaccaaggggataaccgcgggcatcaccatagaacccatggg
catcaccaacagaaaacccatgggcattaccaagggaaaaaccagggagatcaccatggg
catccccatgtgcatcatcaagagaaaaaccatgggcatcaccaaggtaaaatccatggg
catcaccatgggcaacaccagcgaaatgttgagcatcacctcggagagaacagacaccac
aacaatcagcaccacttgaatgaagtggactctgctaacaatacagagaatgcaaccacc
ccagaggtgcctgttctgaagttccccaagtctggtgatggattgaagaggaggaagaga
gactgggttattcctgacatcaatgttcctgaaaataacaaaggaccctatcctcttaaa
gtatctcagatccgttctagtgaagataaagtgaagacgatatcttacagcatcactggt
ccaggagctaatgagcctccccttggccttttcacaatggacaggctcactggtactttg
tatctgacacagcctctggacagagagaaggtggacaggtacacgtttcaagcacatgct
gcggtagatgggtcactaaatgctgagcagccgatggatattatggtgattgtaatagac
cagaatgacaacaaacctgtttttgatcaagatacatttctgggagaagttnctgaatcc
tcaccaacaggttttgaggtgataaatggccaggcttaagtagatcttgacgaggctngc
aatgccaattcggatatctgctaatgtattgtgagccaggatccaaaangccctagtggc
ccactgtttgagatcaacccaaacactggagcaatcagagtcaatgcccgtgggctagac
agagagaaatacccaaagcacactctggtgatagaggcagcagacnatgagggaaatggg
ttgactggaaatgctaaagtaatcatcactgtaacagacagcaatgacaaccctccagct
ttcactcagtcctctgtgagtaaaacatacaaacatacagtagcagaaaatagagtggac
gctnntgtcattacgatggcagtaacagatggtgatgagccacattcaccagcctggaac
gccaaattcaagattgttgatggtgatcctggaggcctgttcacagtcacaacaggaagt
aacaaacacgaagggatcattactactgccaagggtcttgactttgaaatgatcagcaca
cttgttggttgtgcagagaatgacattccatttgctactccactgcccactgccacacac
agtggtggtngaacgcaggatgtcaacgaagctccagtctttgaaccagttgaaaagttt
gtgtccaaaccgnagaaccttcctgttgacggtgacgtggtgcatatcgtttgacctgac
attgcacgcaaacagactgtagaaaagtataaaataatcagcgaccctgcgggctggctg
aacgtggccaaggacacaggcctgattaaggtgaaaagcatcatggacagggagtcgact
tttgtcaaggacagcaaatacacagcactcattggtgcatacgacaatgatgacgtcccg
gccacaggaactggtactctgattatacagcttgaagacgtcaatgacaatgcacccata
attgaggaacgtacaataaaggtgtgtgcttataaggaatcggcccggccgctttcagta
acagatagcatggaccttggctttgctgctccatacagtgtctctttacagggcatgtcc
aagaccaactggaccgctcggatgaatgattccaaaacgggcatcgattctaatttaggc
actgagctggaaagtggagaatgtactgtggtcctgagggttacagacaacgatgtggca
tgagcagacaacaccgcccagctancagtgtgtgactgcacaggtgaaatcgtgtcctgt
tcagggcgaattgccgggtgggagcagcctgcccatgattctggaatactgggaggcatc
ctgttgctactcatgctggtgctgctactactgctgtttgcgagatggagaggaggagaa
aagaaggagccttttctgcaggacgatgatatcagagacaacatctattactatgattat
gagggaggtggagagtagaatgaccaggactatgacctgagtgttctccaccgtggtctg
gacaaccggccagaggtgttcaggaacgacgtgatgccaaacttcatgccggctccctgc
accgggcctcgccctgccaacccagaggaaattggcaaatttcattgatgatgtgatgac
aatctaatgcagcttgataatgacctcacagcgnnccctcatgattccctgctggttttt
ggactatgagggcggtggtctgatgcaggaagcctctcactgaactctgtcgagcagcga
gaccaggactacaactgcctgaacggtcggggacccgccnccaagaaactggcagacatg
tatggcggaggagaggatgatgatatgctgtaa
DBGET
integrated database retrieval system
