Hippoglossus stenolepis (Pacific halibut): 118118888
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Entry
118118888 CDS
T08308
Symbol
nfkb2
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit isoform X1
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04010
MAPK signaling pathway
hsp04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118118888 (nfkb2)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
118118888 (nfkb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118118888 (nfkb2)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
118118888 (nfkb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
DUF6505
Motif
Other DBs
NCBI-GeneID:
118118888
NCBI-ProteinID:
XP_035028266
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All DBs
Position
12:24608881..24630033
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AA seq
934 aa
AA seq
DB search
MFCFLLKQKKKLSHPNRFKGKSLKEEEQISFLLPGAEPSSSSHSSSSVCLLRHGRSSELQ
LNLMPYDYIPPVDIKTEPYIPETAHGPYIQIIEEPKQRGFRFRYECEGPSHGGLPGASSE
KNRRTYPTVKINNYVGHARVEVQLVTHTDPPRVHAHSLVGRHCTEKGTCTLDVGPNDLTA
SFSNLGILHVTKKGVVEILCKRLRDERRRHKGHTLTDVEESVCLKDAKDLGKVMDLNIVR
LKFTAYLQDSNGGFTRALKPVVSNPIYDSKSPNASNLKISRMDKTCGSVLGGDEIFLLCD
KVQKDDIEIRFYEEDDEGGWEAFGDFSPTDVHKQYAIVFKTPPYHSAEIERPVTVFLQLK
RKKAGDSSDPKQFTYIPHVQDKEEVLRKKQKPLPHYESWRGGGRGGGGGAGGFGGGGGGG
GGGFQFNQQMNGGGGGGGGAFFTGGFTGFTGGGGAQMSGSTPQTDVAQSDGQTTGSPLQQ
QLCQIAAALHSRASQSARQTAAALLQYCSTGDARVLLAIQRHLCGVQDGNGDTPLHLAVI
HQQTGVIQQLIHTLLSSQQQNVLNVSNHLRQTPLHLAVITRQVKVVEVLLRAGADLSLVD
KDGRSPLHLAALAGDSATLRPLLAHMGEHHTHLVNTADFHGLHPLHLAVRRDGERCLRQL
VEGGAKINAPEQKSGNSALHLAVRENLFKVACTLITELKADVNACTFGGNTPLHLAAGLG
SPTLCSMLIAAGADKNMENDEPLFFNYSSEEEDKDEDAPITEQEAVASQPINPRKRPAGH
TPLDLAKCQRVRNLLTSRQSPTSGRHGSKRIKSSSSEERDCSGLDEDTLSRLVEVLSVGD
VPWRKLAEKLGMMTLTHLYQDSVTPCHHLLQHYKLGGGPLDGLVDALQSLGLSDGVQLLR
SSELRDDKHNTDATVDSGFGSQPMEEEEPPVANE
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgttttgttttttactgaaacagaagaaaaaactttcacatccaaacagattcaaagga
aaatccctgaaggaggaagagcagatcagcttcctgctgccgggagcagagccctcatct
tcatctcactcctcttcatcggtgtgtctgctgcgtcatggccggagctctgagctgcag
ttgaacctgatgccgtacgactacatccctccagtggacataaagaccgagccctacatc
ccggagacagctcatggtccctacattcagatcatcgaggagccaaaacagaggggtttt
cgtttccgctatgagtgcgagggtccgtcccatggcgggttaccgggggcctccagtgag
aagaacaggagaacgtacccgactgtgaagatcaataactacgtgggtcacgctcgggtc
gaggttcagctggtgacgcacacagacccccctcgagtccacgcccacagtctggtgggc
cgccactgcaccgagaagggaacctgtacgctggacgtgggccccaacgacctcaccgcc
tcgttcagtaacctcggaattcttcacgtgaccaagaaaggtgtcgttgagattctgtgc
aagaggctgagagacgagaggaggagacacaaaggacacacactgacagacgtggaggag
agtgtgtgtctgaaggatgcaaaggatcttgggaaggtgatggacctgaacatcgtgagg
ttaaagttcaccgcctacctgcaggacagtaacggaggattcaccagagcgctcaaaccc
gtcgtctccaaccccatctacgacagcaagtcgccaaacgcctccaacctgaaaatctct
cgtatggataagacgtgcggctcggtgctcggaggagacgagatcttcctgctctgtgac
aaagtccagaaagacgacatcgagatccgcttctatgaggaggacgacgagggaggatgg
gaggcgttcggggatttctcacccactgatgtccacaaacagtacgccatcgtgttcaag
actccgccctatcacagcgcagagatcgagcgtcccgtcaccgtcttcctgcagctgaag
aggaagaaggccggcgacagcagtgaccccaaacagttcacctacatcccacatgtccaa
gataaagaagaggtattgaggaagaagcagaaaccgctgcctcactatgaatcctggaga
ggaggagggcgaggaggtggaggaggagctgggggtttcggaggaggaggaggaggagga
ggaggaggatttcagttcaaccagcagatgaacggaggaggaggaggaggaggaggagct
ttcttcaccggaggtttcactggcttcactggagggggaggggctcagatgtcaggctcc
acccctcagacagatgttgcccagagtgacggacagacgacaggttcgcctctccagcag
cagctctgtcagattgctgcggcgctccacagccgagcgtctcagagcgccagacagacc
gccgccgccctgctgcagtactgcagcaccggggacgcccgcgtcctcctggctatccag
agacacctctgtggtgtccaggacggcaacggagacactcctttgcacctggccgtcatc
caccagcagacaggtgtgattcagcagctcattcacactctgctcagcagccaacagcaa
aacgtcctcaacgtgtccaatcacctccgacagacgccgctccacctggccgtcatcacg
cggcaggtgaaggtggtggaggtgttgttgcgggccggggcggacctcagcctggtggac
aaagacggccgcagcccgctccacctggccgcgctggccggagacagcgcaacactccgc
cccctgctggctcacatgggggaacaccacacccacctggtcaacaccgccgacttccat
ggtctccacccccttcacctggcagtgaggagggacggcgagcgctgcctccgccagctg
gtggagggaggagccaagatcaacgcacccgagcagaagagtggaaacagcgccctccac
ctggccgtcagagaaaacctgttcaaggtggcgtgcacgctcatcacggagctgaaggcc
gacgttaacgcctgcacgtttggaggaaacacgccgctccacctggcggccggtctgggc
tcgccaacgctctgctccatgctcatcgcagcaggagctgataagaacatggagaacgac
gagccgctctttttcaactactcgtcagaagaagaagacaaagacgaagatgcaccaatc
acagaacaggaggccgtcgcctctcagccaatcaaccctcgcaagagaccagcaggacac
acccccctagacctcgctaaatgtcaaagggtgaggaacctgttaacgtccagacagagt
ccaacgtccggtcgtcatggcagcaagaggatcaaatcaagcagcagtgaagagcgggac
tgttcggggctggacgaggacacgctgtcccggctggtggaggtgctgagtgtcggagac
gttccctggaggaaactggcggagaagctggggatgatgacgctgacgcacctgtaccag
gacagtgtgacaccgtgccaccacctgctgcagcactacaagttggggggcggtccactc
gacggcctcgtcgacgcccttcagtcgctcggtttgtccgacggagtccaactgctgaga
agctccgagctgagagacgacaaacacaacacagacgccaccgtcgacagcggcttcggc
agccagccaatggaagaggaggagccacccgtagccaatgagtga
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