Hippoglossus stenolepis (Pacific halibut): 118118918
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Entry
118118918 CDS
T08308
Symbol
srfb
Name
(RefSeq) serum response factor b isoform X1
KO
K04378
serum response factor
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118118918 (srfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118118918 (srfb)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
118118918 (srfb)
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Gene cluster
GFIT
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
118118918
NCBI-ProteinID:
XP_035028341
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Position
12:complement(7600000..7624565)
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AA seq
600 aa
AA seq
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MLPSQVGSAPPGNGSASGRGTTGHGAGVVGSGVRPVLVRAGQALQGVGECAAGRQGERDA
IGMLGANCPGGPRGVRPGNGTGVTSLQSAVQGSMVGLNAGVVLPHGARFDPDRESAPLCS
GSDNDSDSAEDDDPVGSLGDSRRGVKRERGEMEAAVTGQEVGVAPGGYGMVPGGVAGAKP
GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT
FATRKLQPMITSETGKALIQTCLNSPDSPPRSDPSTDQRMSATGFEETDLTYQVSESESM
GDTKKTCFCFFSSQDSLKPAFTVASLPGSTQSTVPTTSTTMQVSSGTSFPLTNYLAPVSA
SSNISANGTVLKAGGSTGVMQLPGGFTFMPAGTPLPPGTPTIPLSQLQQHSLALQGQHGQ
ALAQQPQQGQQAVFRFPAAVSLTGAGVPQQLQAIQVHQNTQSSEHNQDISHTSTNSTATV
SLPATIVTSSIPTSVAGHMMYPSPHTVMYASSSGLTDGGLAVLNAFSQGTSAMQVSHAQG
QDGGGVPQVFLTAPPGTVQIPVSAVQLHPMVIGQQSSGSSSNLTELQVVNLDVAQNSKSD
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgttaccgagccaggttgggtcggcaccacctgggaacggctcagcttcgggcagggga
accacagggcacggcgcgggggttgtcgggagcggggtccgtcccgttttggtgagagca
gggcaagctttacagggggtcggcgagtgcgctgccgggcgacaaggggagagagacgcc
atcgggatgctgggggctaactgtcctgggggtccgagaggtgtgcggccggggaacggg
acaggcgtgacctccctgcagagcgccgtgcaggggagcatggtggggctgaacgcgggg
gtcgtgttgccgcacggagcgcggttcgacccggacagagagagcgctccgctgtgcagc
ggctcggataacgactcggactccgcggaggacgacgaccccgtgggttcactcggggac
agcaggagaggggtgaagcgggagagaggggagatggaggcggcggtgacgggacaggag
gtgggagtagctcccggaggttacggcatggtgcccggtggggtcgcgggggcgaagccg
gggaagaagacacgtgggcgcgtcaagataaagatggaatttattgacaacaagttgaga
cggtacacgactttcagcaagaggaagaccggcattatgaagaaggcctatgaactctcc
accctgacgggaacccaggttcttctgctcgtggccagtgaaacaggtcacgtttacact
tttgccactcgcaagctccagccaatgatcaccagtgaaacaggcaaagccctgatccaa
acatgcctcaactcgccggactcgccgccacgatctgacccgtccacggaccagcgcatg
agtgccacaggcttcgaggagacggacctcacctatcaggtgtcggagtcggagagcatg
ggtgacacaaagaagacttgtttttgttttttctcctcccaggattcactgaagccggcg
ttcacggtggccagccttccaggcagcacccagtccacagtacccaccacctccaccacc
atgcaggtgagcagcggaacttcgtttcccctcaccaactacttggcgcccgtctcggcc
agcagcaacatcagcgccaacggcaccgtcctcaaggccggtggctccacaggggtcatg
cagctgcccggtggcttcaccttcatgcctgcaggcacacctctcccccctggcaccccc
accattcctctgagccagctgcagcagcactccctggccctccaggggcagcatggtcag
gccctggcccagcagccacagcagggacagcaggctgtcttccgcttccctgctgctgtc
tccctcacaggagcaggcgttccccagcagcttcaggctatccaggtccaccaaaacacc
cagtcctctgaacacaaccaagacatctcccatacctccacaaactccaccgcaacggtg
agtctcccagcaaccatcgtcacctcatcaatcccaacgtcggtggcgggtcacatgatg
taccccagcccccacactgtaatgtacgcctccagctcggggctgaccgacggggggctg
gccgtgctcaacgccttctcccagggcacctccgccatgcaggtgtcccacgcacagggt
caagatggaggtggtgtccctcaggtgttcctcacggcacctcccggcacggtacagatc
cctgtctctgcggtgcagcttcacccaatggtgattggtcagcagtcgagcggcagcagc
agtaacctgaccgagctgcaggtggtcaacctggacgtggcacagaactcgaagagtgac
tga
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