Hippoglossus stenolepis (Pacific halibut): 118119328
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Entry
118119328 CDS
T08308
Symbol
zswim8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hsp04121
]
118119328 (zswim8)
Ubiquitin system [BR:
hsp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
118119328 (zswim8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Ribosomal_L24e
Motif
Other DBs
NCBI-GeneID:
118119328
NCBI-ProteinID:
XP_035029086
LinkDB
All DBs
Position
12:803521..836085
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AA seq
1986 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKG
GWEYSTDHTLTALSDGQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPE
NEEDIRLYSCLANGSPDEFQRGEQLYRIRAVKDPLQIGFHLSATVVSSQAGQSKGAYNVA
VMFDRCRITSCSCTCGAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKF
AQYLISELPQQILPTAQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLS
DNIKKTLHKFCGPSPVVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVR
EMFKRRDSNAAPLLEILTEQCLTYEQIISWWYSVRTSASHSSASGHTGRSNGQSEVAAHA
CASMCDEMVVLWRLAVLDPTMSPCRRLELAGQLKQWHLKVIEIVKRGQHRKSLDKLFQGF
KPAVESCYFNWEVAYPLDGITYCSADKKSATFCWSRAVQHQRGVKAAAGGVGEPPEPGGG
GRAEGGAVGDYKGRGSGHLSQQELAVRPKETILTKRKGLSVSGGGGMLVRLGGSVSLSLE
DGGGKCMYKGPGSSSGGKLKLTQGGGKGASVGGPGGSGALGGGKHASAKRRTSSEDSSLE
PDLAELSLDDGCSLALGAEASNTFEFLPPPPEMLPSSSPLLRDSRKYSSTNGGNKMFETK
RVSLSSAALPAAETAPSGFPSKETVVVVMDTPNAAEKEAELEVESVQNRDEDVDSAGSNQ
PSTSTTTTRSGTTQTSAKAQRGNEDAASAGAAGAGSGTAAAAGPANQEAEAPGAAAGGEA
VGEDDYQAYYLSAASEEGADRQLTDNHQEEEPDIFAGIKPLDQEGRMEVLFACAEALYAH
GYSNEACRLAVELARDLLANPPDLKVEQPQTKGKKSKVSTSRQTQIATNTLSKTSFLLTV
LCERLELHNLAFSTGMFSLELQRPPASTKALEVKLAYQESEVVALLKKIPLGLVEMSVIR
ERGEQLRDGNFCDYRPVLPLMLASFIFDVLCTPVCAVVSPTGSRPPSRNRNNEMPGDEEL
GFEAAVAALGMKTTVSEAEHPLLCEGTRRVKGDLALALMITYKDDQSKLKKILDKLLDRE
SQTHKPQTLSSFYSSKPAAGSQRSPSKHTASGHSGVGGATGGVSKHAPSSSSATTVAASS
SSSTSAVTLAGEEVPHQAELNPVPSSAAGESTAETREHVSDGPPPSSDQQSETAPFKLEA
TVPSRLALGARCGYSQRCWGSPVRQKKKHTGMASIDSSAPETTSDSSPTLSRRPLRGGWA
ATSWGRGQDSDSISSSSSDSLGSSSSSGSRRAGGGARAKSNDTSRYKGRRPECHAPHVPN
QPSEAAAHFYFELAKTVLIKAGGNSSTSIFTQPSASGGHQGPHRNLHLCAFEIGLYALGL
HNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVECWDGHLTPPEVASLADRASRARD
LNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNVMLEKACMAVEEAAKGGGVYPE
VLFEVAHQWYWLYEQSVGGGSGQQRETSGRCGANGGSGRRLMESSCGVHDSGANMESSGV
ATVTASVTAAAVVPVISVGSTIYQSHAMPGQAIAHPHSQGLHPYTTIQAHLPTVCTPQYL
GHPLQHVARPTVFPVSGAAYPQGMHPAFIGAQFPFAVATGPQPPMAATAVTFPGVPVPSM
TQIAVHPYHTETGLPLGTTVAVGSVHAGPTIQTIQGASLPSLSSQPGSLVSTPFPAEDEQ
HSQPISQQGLHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTEDVKWLLGLAARLG
VNYVYQFCVGAAKGVLSPFVLQEIIMEALQRLNPAHIHAHLRTPAFHQLVQRCQQAYLQY
IHHRLIHLTPADYDDFVNIIRSARGAFCLTPVGMMQFNDVLQNLKRGKQTKELWQRISLE
MATFSP
NT seq
5961 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatgttcgccgagtgggaggacggggagaggttctccttcgaagactcggac
cggttcgaagaagactctctgtgctccttcatctcagaggccgagagcctgtgtcagaac
tggagaggatggaggaagcagtctgctggacccaactcccctactgtcaaaattaaaggt
ggatgggagtacagtactgatcacactcttaccgccctttcagatggtcaggtgattcca
ctggtagagctgtcagcaaagcaggtagcattccacatcccgtttgaggtggtggagaag
gtctacccccctgtcccagaacagctccagcttcgcattgcctactggagcttccctgaa
aatgaggaagacatcaggttatattcctgtctggctaatgggagtccagatgaattccaa
cgtggagagcaactctacaggatccgagcagtcaaagacccgctgcagatcggcttccat
ctcagtgctacagtcgtgtccagtcaggctggtcagtctaagggagcatacaatgtggcg
gtcatgtttgatcgctgccgcatcacttcctgtagctgcacctgcggcgcgggggccaaa
tggtgtgcccatgtggtggcactgtgcctgttcaggatccataatgcatcagcagtttgt
ctgagggctccggtctctgagtctctgtccaggctgcagagggaccagctgcaaaagttt
gcccagtacctcatcagtgagctgcctcagcagatcctgcccacagcccaacggctactt
gatgagttgctctcttctcagtctactgccatcaacacagtgtgtggagctccagatccg
acagcagggccctcagcgtctgaccagagcacatggtatttggatgagtcgactctcagt
gacaacatcaaaaagactctgcacaagttctgcgggccttcacctgttgtcttcagtgat
gtaaactccatgtatttatcgtccacggagccgccagctgctgctgagtgggcatgtctg
ctgcgtcctctgaggggcagagagccagaaggcatttggaaccttttgtccattgtcagg
gagatgttcaagagacgagacagcaatgcagctccactgctggagatcctcactgagcag
tgcctcacctacgaacagatcattagctggtggtacagtgttcgaacatcagcgtcgcac
agcagtgccagtggtcacactgggcgcagcaatggccagtcagaggtggcggctcatgcc
tgtgccagcatgtgcgatgagatggtggtgctctggagactcgctgtgcttgacccgacg
atgagcccttgcaggcgtctcgaactggcaggccagctgaagcagtggcatctaaaggtg
attgaaatagtgaagcgggggcaacatcgcaagtccctggataaactgttccagggcttc
aaacctgctgtagagtcctgctactttaactgggaagtggcctacccactggatggaata
acctactgcagtgcagataagaagagtgccacattttgctggtctcgggcagtgcagcac
cagagaggagtcaaagctgctgcaggaggggttggagaacctcctgaaccagggggaggg
ggcagagctgaaggtggagctgtaggagattataaaggaagagggagtggtcacttgtct
caacaagaattggcagtccgacccaaggaaaccattctaaccaagaggaagggtctgtca
gtgagtggagggggagggatgctggtccgtttgggagggagtgtctctctttccctggaa
gacggaggtgggaagtgcatgtacaaaggtccaggctcctcctctggagggaagctgaaa
ctgacacagggaggtggaaaaggggcatcggtaggaggacctggagggagtggagcatta
ggagggggaaagcatgccagtgccaagcggagaaccagcagcgaggacagctccctggag
ccagacttggctgagctcagcctggatgatggctgtagtctggctttgggggctgaggcc
agcaacacttttgagtttctacccccaccaccagaaatgctgccatcttcaagcccactg
ctcagagactcgcgcaagtacagcagcaccaacggagggaacaagatgtttgaaacaaag
cgtgtcagccttagctcagctgcacttcctgctgcagagactgctccatccggcttccct
tccaaagagacagtggtggttgttatggacacgcccaatgctgcagaaaaggaagcagag
ctggaggtggagtctgtccagaacagagatgaagatgtagactcagctggcagtaatcaa
ccctctacctccaccactacaacaagatcaggcaccactcaaacatcagccaaggcccag
cggggcaacgaagacgcagcgtctgctggagcagcgggagcagggagcgggacagcagct
gcagctggaccagctaaccaagaagcagaggcaccaggtgcagcggctggaggagaagct
gtgggtgaggatgactatcaggcatactacctgagtgctgcctcagaggagggagcagac
agacagttgactgacaaccatcaggaggaggagccggacatctttgcaggaatcaaaccg
ctggatcaggagggacgcatggaggtgctgtttgcatgtgcagaggccctttatgctcat
ggttacagtaatgaggcgtgccggctggcagtggagctggccagagacctgttagccaac
cctccagacctgaaagtggagcagccacagactaagggtaagaagagcaaagtgtcgacc
agccgtcagacgcagatagccaccaacacactgtcgaaaacttcctttctcctcactgtt
ctctgtgagcgtctggagctccacaacctggccttcagcaccggcatgttctccctggag
ctccagagaccaccggcgtctaccaaagctctggaggtgaagctggcctaccaggagtcg
gaggtggtggctctattgaagaagattcctctgggcctggtggagatgtcggtgatcaga
gagagaggggagcagctcagagacggaaacttctgtgattacagacctgtgctgcctctc
atgttggccagcttcatctttgatgtactgtgtaccccagtttgtgcagtcgtgtcccca
acaggttcccgtccacctagtcgcaaccgtaacaatgagatgccaggtgatgaggagctg
ggctttgaggctgctgttgctgcacttggtatgaagaccacagtcagtgaagcagagcat
cctctactgtgtgaaggaactagacgagtgaagggtgacctggctctggctctcatgatc
acttacaaggatgaccagagcaagcttaagaagatactggataagttgttggacagggag
agtcagacccacaagcctcagactttaagctcattctattcaagcaagccagcagctggc
agccagcgcagcccatccaaacacactgcttctggccacagtggagtgggcggagccaca
gggggtgtatctaaacacgctccttcatcttcctctgcgaccactgtggcagcctcttcc
tccagctctacgtctgctgtgacactggctggagaagaggtgcctcatcaggctgaactc
aacccagttccgagcagtgccgcaggggagagtactgctgagaccagggagcatgtatca
gatgggcctcctccatcgagtgaccagcagagtgaaacagctccgtttaagctggaggcc
accgtgcctagtcggctggcgctgggggcgcgctgtggttacagccaacgctgctggggc
tcaccagtccgtcagaagaagaaacacactggcatggcgagtattgatagcagtgctcca
gagacgacctccgacagttcccccacccttagccgccgaccgctccggggtggctgggca
gcaacatcttgggggcgtggccaggacagtgatagcatcagcagttcatcatctgattcg
ttgggctcttcctcctccagtggctctcgtagggctggtggtggggccagagccaagagc
aatgacaccagcaggtacaaaggacgacgtccagagtgccatgccccccatgtgcccaac
cagccgtcagaggcagcagcccatttttactttgaactcgccaagacggttctgatcaaa
gctggaggaaactcctcaacttccattttcacccagccctctgccagtgggggccaccag
gggccccacagaaacctgcacctgtgtgcctttgagattggcctgtatgcgcttggcctc
cacaactttgtctcacccaactggctgtccaggacctactcctcacatgtgtcctggata
actggccaggccatggagatcggcagtgctgctctcaatattttggtggagtgctgggat
ggtcaccttacccctccagaggtggcatccctagcagaccgagcctcgcgggccagggac
ctcaacatggttcgtgcagcagcggagctggccctaagctgcttgccacatgctcatgcc
ctgaatcctaatgaaatacagagagccctggtgcaatgcaaagagcaggacaatgtgatg
ctggagaaggcctgcatggcagtagaggaagcagccaaggggggaggtgtgtatcctgag
gttctgtttgaggtcgctcaccagtggtactggctgtatgagcagtcagtgggcgggggc
tcaggtcagcagagggagacctctgggcgctgtggggcaaacgggggctcgggcagaagg
ctcatggaatccagctgtggtgtccatgacagtggggccaacatggagtcttcgggggtt
gcaactgtcacagcctcagtcactgcagcagccgttgtacccgtcatctccgtgggctcc
accatctaccagtcccatgccatgcccgggcaggccatagctcacccccacagccaaggc
ctccacccctacaccaccatccaggcccatctccccaccgtctgcactccccagtacctg
ggacatcctctgcagcatgtcgcccgacccacggtcttccctgtgtctggggctgcatat
ccacagggaatgcacccagccttcatcggggcccagttccctttcgcagtggccactggc
ccccagccacctatggcagccacagctgtgactttccctggtgtccccgtaccgtccatg
actcagatcgccgtccacccctaccacactgagaccggcctgccccttggcaccactgta
gcagtaggcagcgtccacgccggccccaccatccagaccatccagggagcatctttaccc
tctctctcctctcagccaggctcattggtcagcactcctttcccagcagaggacgagcag
cacagccagccaatcagccagcagggtctgcactaccttcactctgcctacagagttggt
atgctagcattggaaatgctgggcaggagggctcacaatgatcaccccaacaacttctcc
aggagtccaccttatactgaggatgtcaaatggctgctgggactggctgcaaggctagga
gtcaactacgtgtaccagttctgtgtcggagcagcaaaaggtgtcctcagtccatttgtt
ctgcaggagatcatcatggaggccctgcagagactgaacccagcccatatccacgctcat
ctccgaacacctgctttccatcagctcgtccagcgctgccaacaggcctacctgcagtac
atccaccaccggctcatccacctgacacctgctgactatgatgactttgtcaacatcatc
cgcagcgctcgaggtgctttctgcctgacgcctgtgggtatgatgcagtttaacgatgtg
ctgcagaacctgaagagaggcaagcagacaaaggagctgtggcagcgcatttccctggag
atggcaaccttctccccttaa
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