Hippoglossus stenolepis (Pacific halibut): 118119473
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Entry
118119473 CDS
T08308
Symbol
cdh5
Name
(RefSeq) cadherin-5
KO
K06533
cadherin 5, type 2, VE-cadherin
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04514
Cell adhesion molecules
hsp04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
118119473 (cdh5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
118119473 (cdh5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118119473 (cdh5)
04090 CD molecules [BR:
hsp04090
]
118119473 (cdh5)
Cell adhesion molecules [BR:
hsp04515
]
Cadherins
Major cadherins
118119473 (cdh5)
CD molecules [BR:
hsp04090
]
Proteins
118119473 (cdh5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
118119473
NCBI-ProteinID:
XP_035029384
LinkDB
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Position
12:22772395..22805006
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AA seq
783 aa
AA seq
DB search
MMAWLQLWTMGLMATMALSVSLAIAEDSDLPVAETEKRGPVAIVKKETHPVLFRQKRDWI
WNSLYVEEEKPAPSPHKLGQLKSSQNVEVKRYTIEGEGANTIFTVGPKGDLYVTRLLDRE
EKSSYHLIAKMFDGNNKLIEDSGEFVIQVNDINDNIPVFPKPYNGSIMERSPVGTKVVEV
KATDADDPTSANSELKYSLTGDGETSAFAIDSVTGVISCNVNTLDRETKSQYVVVVKAQD
LRGLPTGNTATTSVTITITDTNDNIASFTRRVYELQVPEDHKLNEKFGTLELEDRDEIQN
KEPIFTILNEYSKVFNVELSASKDGNLMLKQALDYETMNSYTFNVQVRENLRNLRFPADN
VNSAVTTAQVTIKVVDVDEPPVFSQPIYTFTVVEERMVNNIGVITARDPDRAKMTIRYSI
LDKDCPISINPLTGQLSTLRTLDRELEATHMFQVKAQEEPSGLESFVKVNIKVQDINDNK
PELAVDEIFVCENDVTNTVIGTLRATDKDEEPPSFSFGLSGESSNFSIRDNGNNTADIMV
KQGPFSLDDPKDYNVDVRVSDGGRPIQTSITTLAIKSCRCDARRIPTQCKASARRMSVSV
HALIAILLCILTILVIVILFGMRKRYQKDSLASIKNSGEIHEQLVTYDEEGGGEMDTNGY
DVSILSSACQDGSLLRHADRLPHPSLYAMVQKAPHPTACKGDMAAMIESKKGEADHDRDG
FPFDTLHIYGYEGPESLAGSLSSLQSSSTGSNLEYDFLNDWGPRFRTLAELYGVDEPDYY
HQY
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgatggcttggctccagctgtggaccatggggctcatggccacgatggccttatccgtc
tctctcgccattgcggaagactctgaccttcccgtggcggaaacagagaaacgaggcccc
gtcgcaatcgtgaagaaggagacgcaccccgtcctgttcaggcagaagagagactggatc
tggaactctctctacgtggaagaggagaaacctgcacccagcccccacaagctaggacaa
ctgaagtccagccagaacgtggaagtgaagagatatacaatagagggtgaaggagcgaac
accatcttcaccgtgggtcccaaaggagacctgtacgtcaccagattactggaccgagag
gagaagagttcgtaccatctgatcgccaagatgtttgacgggaacaacaagctcatagag
gattctggagagtttgttatccaggtcaatgacatcaacgacaacatccccgtgttcccc
aaaccatacaatgggtccattatggagaggtcccccgtaggaaccaaagtcgttgaggtg
aaggcgactgatgccgacgaccccaccagtgccaactcagagctcaagtattctctgacc
ggagatggagaaacttctgctttcgcaattgacagcgtcacaggtgtgatcagctgcaac
gtgaacacactggatcgggagactaagagtcagtatgtggtggtggtcaaagcccaggac
ctgagaggactccccactggcaacacggccaccacctccgtcaccatcaccatcacagac
accaacgacaacatcgcctccttcacccggagggtctatgagctgcaggttccagaggac
cacaagctgaatgaaaagttcgggactctggagctggaggacagagatgagatccagaac
aaagaacccatctttaccattctaaatgaatacagcaaggtgtttaacgttgagctcagc
gccagcaaggacggaaacctcatgctcaagcaggctctggactacgagacgatgaacagc
tacaccttcaatgtccaagtgcgtgaaaacctgagaaacctgcgttttcctgccgacaac
gtgaacagcgccgtcaccacagctcaggtaaccatcaaggtggtggacgtagatgagcct
ccagtcttctcccagcccatctacaccttcactgtggtagaagaacggatggtgaacaac
atcggagtaatcacggccagggatcctgaccgagccaagatgaccatacggtactccatc
ttggacaaagactgtcctatcagtatcaacccgctcacaggacagctgtccaccctgagg
acattagacagggaactggaggccacacacatgtttcaagtcaaggcgcaggaggagccc
agtggtttggagtcattcgtaaaagtgaacatcaaagttcaggacattaacgacaacaag
cccgagctggcagtggatgagatctttgtgtgtgagaacgacgtcactaatacggtgata
ggaactttgagagctacagataaagacgaagagccgccgtctttcagcttcggcctcagc
ggtgagagctccaacttctccatcagagacaacggcaataacacagcggacatcatggtg
aaacaaggcccgttcagcctggatgaccccaaggattacaacgtggacgtgagggtcagc
gacggaggacgaccgatccagaccagcatcaccacactggccatcaagtcgtgccgctgt
gacgccagacggattcccacgcagtgcaaagccagcgctcggcggatgtcagtgagtgtc
cacgccctcatcgccatcctgctctgcatactcaccatactggtcatcgtgatcctgttc
gggatgaggaaacgctaccagaaggattctctggccagtattaagaacagcggcgagatc
cacgagcagctggtcacgtacgacgaggagggaggaggcgagatggacaccaacggctac
gacgtctcgatcctcagctccgcctgccaggacggctcgctgctccgccacgccgaccgc
ctcccccacccctccctctacgccatggtgcagaaggcccctcaccccaccgcatgcaag
ggcgacatggccgcgatgatcgagtcgaagaagggcgaggcggaccacgaccgagacggc
ttccccttcgacaccctgcacatctacggctacgagggacccgagtctttggccggcagc
ctcagctccctgcagagctcctccactggctcgaacttggagtacgacttcctgaacgac
tgggggccgaggttcaggaccctggcggagctgtacggagtggacgagcccgactattac
catcagtactga
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