Hippoglossus stenolepis (Pacific halibut): 118119513
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Entry
118119513 CDS
T08308
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b
KO
K08131
collagen type IX alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118119513 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118119513 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118119513 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hsp00535
]
118119513 (col9a1b)
Proteoglycans [BR:
hsp00535
]
Extracellular matrix (ECM) proteoglycans
Others
118119513 (col9a1b)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118119513
NCBI-ProteinID:
XP_035029486
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Position
12:11264985..11279155
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AA seq
679 aa
AA seq
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MARALSVRGPLLVLLLQLVLICSAQRSEGPVGPPGPAGVPGIDGIDGDRGKDGEDGLPGP
DGDSGKPGSSGLPGIPGNDGLTGPFGDAGPDGPYGQKGEPGKSGPRGATGVGPDGPPGPP
GPGGLLGELGKVGQPGSMGVRGPQGPNGPTGPRGAAGMLGSADLCRDSCPPGTSGHPGLP
GMKGHKGGKGEGGEPGKQGHKGEEGDQGGQGEVGSQGPTGSQGNRGAMGMMGLKGERGAR
GHDGDLGPQGVMGATGDRGQRGVMGEFGPKGETGVLGPRGITGVPGPKGESGLPGVDGRE
GIPGMPGGKGGVGMAGFPGEVGLQGFPGMPGVPGPKGLGGPKGDFGQSGVPGTLGPAGKT
GERGEQGEVGPIGPFGNPGDIGGKGPEGSSGKPGARGPKGDPGLPGLPGPSGLPGVKGER
GDRGDTGPKGEQGTQGDEGNSGDKGELGESGESGAKGEVGNLGESGRRGPEGGRGQPGID
GPPGTPGPRGMQGNRGQTGVRGSQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPES
GAAGLPGKPGPPGSPGSPGDNGFPGHSGTRGLPGLKGPPGSLGNKGPKGELGDRGSRGPT
ARGPKGQPGAAGLPGEAGKPGYGQEGRDGQRGPPGTHGQHGVPGPPGAAGPNGYCDPSSC
NLQAGAAHQSLDVKGPAGN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggctcgggcccttagcgtcagagggccactgctggtgctgctcctgcagcttgtcctt
atttgctccgctcaaaggagcgaaggacctgttggccctcctggacctgcaggtgtccca
ggaattgatggcatcgatggggatagaggaaaagacggcgaggatgggctcccgggccct
gatggtgattcaggtaaacccggctcctcgggattacctggcattcctggaaatgatggt
ctgaccggcccgtttggagatgcaggacccgacggtccctacggacagaaaggcgaacct
ggaaaatctggaccccgaggggcaactggtgttgggccagatggacccccaggaccaccc
ggacctggaggacttctgggtgaattgggaaaagtgggacaacctggttccatgggtgtg
agaggaccacagggacctaatggaccaacagggcccagaggtgcagctggaatgctcggc
agtgctgacctgtgtcgagactcgtgtccacctgggacttctggacatcccggccttcct
ggcatgaagggtcacaagggtgggaaaggtgaaggaggagaacctgggaaacaagggcac
aagggtgaggagggtgaccagggaggtcaaggagaggtcggatcccaaggaccaacgggc
tcccagggaaaccgtggagccatgggaatgatgggcctcaagggagagaggggagctcga
ggtcatgatggagacctaggtcctcagggtgtcatgggggcaactggggatcgaggacag
agaggtgtgatgggcgagttcgggcctaaaggtgaaacgggtgttctagggccaagagga
atcacaggcgtgccgggtcccaagggagagtctggtttaccaggtgtggatggtcgcgag
ggtattcctgggatgccgggagggaagggaggcgtaggcatggctggttttcctggagag
gttggacttcaggggtttcctggtatgcctggtgttcctggaccaaaaggcttaggcggc
cctaagggagacttcggtcagtcaggcgtccctggaacattgggacctgctggcaaaaca
ggtgagcgtggagaacaaggcgaggtgggacctattggacctttcggtaatcctggagac
attggaggaaaaggccctgaaggttcatctggaaagccaggtgccaggggacccaaaggt
gaccctggcctccccggcctccctggtccttctggtcttcctggtgtgaaaggagagagg
ggggatcgtggagacacaggacccaaaggagagcagggaacacaaggtgatgagggaaac
tctggcgacaaaggagagcttggtgaatcaggagaatctggagctaagggagaggtggga
aaccttggcgagtctggcaggagaggtcccgagggaggtcgaggtcagcctggcatcgac
gggcctcccggcacacccggaccccggggcatgcagggaaacaggggccaaactggagtc
agaggatcccaggggcctgcgggtaaagagccaagtgatcagcacatcagacaagtttgc
atgcgagtcatgcaagaacagctggcccagttagcagctagcttgaggaggccagagtct
ggcgcagctggtttacctggaaaacctggacctccagggtctcccgggtctcctggagac
aatggcttccctgggcattctggaacaagaggccttcccggactcaaggggccaccagga
tccctgggaaataaaggacctaaaggtgaactgggagacagaggctccagagggccgact
gcacgaggacccaaaggtcaaccaggagctgctggacttcctggtgaagcaggcaaacca
ggctacggtcaggagggtcgggacgggcagaggggacctcctggcacccatggtcagcac
ggtgtgcccgggcctcctggtgcagctggccctaatggctactgcgacccgtcgtcctgt
aacctccaggcgggggccgcccaccagtctctggatgtgaagggacccgcagggaactaa
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