Hippoglossus stenolepis (Pacific halibut): 118119576
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Entry
118119576 CDS
T08308
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118119576 (sox1a)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118119576 (sox1a)
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
118119576
NCBI-ProteinID:
XP_035029532
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All DBs
Position
13:16908323..16918712
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AA seq
287 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTTTGQTGPNSGSKANQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGPGGGGGVGLGVGMGSSGIGQRLESPGGHGGSGSSGYAHMNGWANGAYSGQ
VAAAAAAAAMMQEAQLAYSQHPGSGGHHHHHSHHHHSHNPQPMHRYDMTALQYSPISNSQ
SYMNASPSGYGGITYTQHQGSGVSSSTAMGTLGSLVKSEPSISPLLE
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaactgacctccattcccccggcccccaaacgaacactacc
acggggcaaacggggccgaatagcgggtccaaagcgaaccaggaacgggtgaagagaccg
atgaacgctttcatggtgtggtcccgtgggcagcggaggaagatggcacaggagaacccc
aagatgcacaactctgagatcagcaagcggctgggtgccgagtggaaggtaatgtccgag
gctgagaagcgtcctttcatcgacgaggcgaaacgtttgcgagccatgcacatgaaggag
catccggattacaagtaccggccaagacggaagaccaagacgctgctgaaaaaggacaaa
tattccctcgcaggaggactgctttctgggcccggtgggggtggtggagttggtttaggg
gtcggcatgggttcatcggggatcggacagaggttagagagccccgggggtcacggaggc
tcaggcagctccggctacgcgcacatgaacggctgggcgaacggtgcgtactcggggcag
gtggctgcagcggcagcagccgcagcgatgatgcaggaggctcagcttgcctacagccag
cacccggggagcggagggcaccaccaccaccactcgcaccaccaccactcacacaacccg
cagcccatgcaccgctacgacatgacagcgctgcagtacagccccatctcgaactctcag
agctacatgaacgcttcaccctccggctacggcgggatcacctacacacagcaccagggc
tccggcgtctcctcctccactgccatggggacgttagggtcgctggtgaaatcggagccg
agtatctctccgttgttggaatag
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