Hippoglossus stenolepis (Pacific halibut): 118119706
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Entry
118119706 CDS
T08308
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03015
mRNA surveillance pathway
hsp04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118119706 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
118119706 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118119706 (sympk)
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118119706 (sympk)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118119706 (sympk)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
118119706 (sympk)
U7-dependent histone pre-mRNA processing factors
118119706 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
118119706
NCBI-ProteinID:
XP_035029774
LinkDB
All DBs
Position
13:3367470..3378312
Genome browser
AA seq
1299 aa
AA seq
DB search
MDLSPEEGETSHMIDMTTSEKVVDLLNQAALIPTDEKLAVLKQVQELIINKDPSLLDNFL
DEMIAFQTDKSIEVKKFVIGFIEEACKRDNELLLRLIANLNMLLKDESVNVVKKAILTLT
QLYKVTLQWLLRAKGASDMQEACWDMVTQMKGDVLAHLDSENDGVRTHAIKFTEALIISL
SARTSDSDIPKRQEGDISLDKVPKDHSYIRYDVLCEEGKSALEKLLKFMVHPAISSINLT
TALGSLASIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHPCS
LEYQGQISTLLLDLGMPQNEITRSTPVVREQRKRPRHEQYTEGKKVKMEPTMMEDDEDKE
EPAPLTAPKPAAVPVVQSAIDLTAEFLHPLLNPQNVANLVLLSMVYLPDVMPASFQATYT
PVESAGTDAQIKHLARLMATQMTSAGIGPGLEKCKAREEDACKVEDNDEDSASKDLLIKR
KVAMKGQAISVVGGYTENASTAEAPSPATVKRLPEPIVPTAQTKMTGATGRKKVFRLSDV
VQPLSDPQIETLTSKAIKRILHSEKAIAQSGMSHVRVKLLARLVTQFEGTMKEDVLAFIL
EDIRTRSDLAFSLLYQEYNTYLSQLPSGQLESYDHCLYTLLSGLQEKPEQRDGLFTKLVL
EAPIITESALEVIRRYCEDESRVYLGMTTLKELIIKRPSRQFQYLHVLLDLSSHEKEKVR
TTALAFLKRMYEKDQLRDYIEKFALNYLQLLVHPNPPSLLFGADKDTEVASPWTEETVRQ
CLFLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVENCP
KGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQALPK
LIKLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSTKCDMKSIIKATNLC
FGEKNVYTSEVLAVVMQQLMEHSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIVKQVW
KYPKVWEGFVKCCQRTKPQSYSVLLQLPPAQLTSVFERCPEMRDPLLQHVLSFTPHQQAH
IPTSIMTILEANKKSPLKPVEPVVEKEIETLTAPAATEMVTTATLKEPEMEVQHEPVQQE
SFQHEPVKHELFQHEPVQREPVQHKLFEHEQVQHELFEHEPVQHELFEHEPVQREQVQHE
LFQPETIQHEPVQHEPAIMQDEEPMEQEEFEPVIQEESFDNVSQVELSRDSDTPSPHSEA
ADEPSEVSEPEPSDFQERERDVEAEATGSEADSGSEDME
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atggacctgtctccagaggagggagaaacctcccacatgatcgacatgaccacgagtgag
aaggtggtggatctcctgaaccaggcggctctgattcccacagatgagaagcttgctgtg
ctcaaacaggtccaggagcttatcatcaacaaggacccgtctcttctcgacaatttcttg
gatgagatgattgcgtttcagactgacaagtctattgaggttaaaaagtttgtcattggc
ttcatagaggaagcttgtaaaagggacaatgagcttctcctccgactgattgccaacctg
aacatgttgctgaaggatgaaagtgtgaatgtggtgaaaaaagccatcctcactctcacc
cagctgtacaaagttactctgcagtggctgttgcgcgccaaaggagcatcagatatgcag
gaggcatgctgggatatggtcacacagatgaaaggggatgttctggcccacctggattct
gaaaatgacggcgtgcgcactcatgccatcaagttcacagaggcactaattatcagtctg
tcagcacggacatcagactctgacatccccaaaagacaggagggggacatcagcctggat
aaagttcctaaagatcactcgtacattcgatacgatgtcttgtgtgaggagggaaagtct
gcgctggagaagctgctgaagttcatggtccacccggccatttccagcatcaacctcact
acagcactgggctcactggcctctattgcccgtcagaggccaatgttcatgtcagaggtg
gtgcaggcatacgagacactgcatgcaaacctgccgcccactctggccaagtctcaggtg
agcagcgtgcggaaaaacctgaagctgcacctagtggcagtcctcaagcatccctgcagc
ctggagtaccagggtcagatcagcactctgctgctggacctgggaatgccccagaatgaa
ataacccgctccacacctgtagtgcgcgagcagcgcaaaagaccgcgccatgaacaatac
acagagggaaaaaaggttaagatggaaccgaccatgatggaagacgatgaggacaaagag
gagccggctcctctcaccgcccctaaaccagctgctgttccagtcgtacagtcggccatt
gacctcacagctgagtttctgcacccactgctcaacccacagaatgttgccaacctggtg
ctcctcagcatggtgtatctgcctgatgtcatgccagcatccttccaggccacatacacg
cctgtggagtcagcaggcaccgatgcacagattaaacatctggccaggctgatggccaca
cagatgacttcagccgggattggtccaggacttgaaaagtgcaaagccagagaggaagat
gcctgcaaagtggaagataatgacgaagactctgcatctaaagacctgctcatcaaacgc
aaagttgcgatgaagggccaagcgatctccgtggtgggaggttacacagaaaacgcttca
accgctgaggctcccagtcccgccacagtcaagaggcttcctgagcccatcgtgcccact
gcacaaaccaaaatgacaggggcaactgggaggaaaaaagtgtttcggttgtcagatgtc
gtccagccgttatcagacccgcagattgagacgttgacctccaaagcaatcaaacgcatc
ctgcattcagagaaggctattgctcaaagtggcatgtcccatgtccgagtgaagctcctc
gccaggcttgtgacgcaatttgaagggacgatgaaagaagatgtgctggcgtttattcta
gaggacatcaggaccaggagtgacctggcattttctctcctgtaccaagagtacaacact
tacctcagccagctgccctctgggcagttggaaagttatgatcactgtctctacacgctg
ctctccggcctgcaggagaaaccagagcagagagacggactcttcaccaaactggttctg
gaggctcccattataacagaatctgctttggaagtaataagacggtactgcgaggacgag
tctcgggtgtatttgggcatgacgactctgaaggagctcatcatcaaacggccctcaagg
cagtttcagtatctgcatgttcttcttgatctcagctcacacgaaaaagagaaggtgcgg
accaccgctctggcttttctgaagcgtatgtatgagaaagaccagctcagagactacata
gaaaagtttgccctgaactacctgcagcttcttgtccatcccaaccctccatctcttctc
tttggggctgacaaagacacagaggtggcgtctccctggactgaagagaccgtgagacag
tgtctgttcctctacctgtctctgcttcctctaaaccaccggctggtccatgagctcgct
tctgtctacactgaggccatcgctgacatcaagcgcagtgtgctccgagcaatagagcag
ccgatccgtggaatgggaatgaactcgccagagctgctgcttctggttgaaaactgtcct
aaaggagcagagactctagtcacgcgctgtctgcacattttgaccgataaagtgcctccg
tctcctgagctggtggagagagttcgagatctttaccacaaacgtgtgcctgatgttcgt
ttccttattccggtcataaatggcctagaaaagaatgaagtcatccaggctctccccaag
ctcatcaaactcaaccccattgtagtgaaggaggtgttcaaccgtctgttgggaactcag
cacagcgaaggaagttcgtctgtgtcccctctcaccccaggagacctgctcattgcctta
cacaacatagactccaccaaatgtgatatgaagtctatcataaaagctaccaacctctgc
ttcggggaaaagaatgtctacacgtcggaggttttggccgtggtgatgcagcagctgatg
gagcacagccccctccccatgctgctcatgcgcaccgtcatccagtctctcaccatgtat
cccagactgggcggctttgtcatgaacatcctgtcccgcctcattgtgaagcaggtgtgg
aagtatcctaaggtgtgggaaggatttgtgaaatgctgccaaaggaccaagcctcagtcg
tacagcgtgctcctgcagctgccgcccgcccaactgacgagtgtgtttgaacgctgccca
gagatgagagatcctcttctacagcacgtcctctccttcacccctcatcagcaagctcac
atacccacctccatcatgacgatcctggaagcaaataaaaagtcaccactgaaaccagta
gagccagttgtggagaaggagatcgaaacactcactgctccagctgccacagaaatggtt
accactgcaacactgaaagaaccagagatggaagtccagcacgagccggttcaacaagaa
tcgttccagcacgagccggtaaagcacgagctgttccagcacgagccagttcagcgcgag
ccggttcaacacaaactgttcgagcacgagcaggtccagcacgaactgttcgagcacgag
ccggtccaacacgaactgttcgagcacgagccggttcagcgcgagcaggtccagcacgaa
ctgttccagcctgagacgatccagcacgagccggtccagcacgagccagccatcatgcag
gatgaagaaccaatggagcaagaagagtttgaacctgtgatacaagaggaaagttttgac
aatgtctcccaggtggaattgtcgagagacagtgatacaccatcccctcactccgaggca
gctgacgagccatcggaggtttctgaacctgaaccttcagatttccaggagcgagagaga
gatgttgaagcagaagccaccggctcggaggctgacagcggcagcgaggacatggaatga
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integrated database retrieval system
