Hippoglossus stenolepis (Pacific halibut): 118119865
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Entry
118119865 CDS
T08308
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsp04147
]
118119865 (col18a1a)
00535 Proteoglycans [BR:
hsp00535
]
118119865 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118119865 (col18a1a)
Exosome [BR:
hsp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118119865 (col18a1a)
Proteoglycans [BR:
hsp00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
118119865 (col18a1a)
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118119865 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
118119865
NCBI-ProteinID:
XP_035030155
LinkDB
All DBs
Position
13:complement(4409930..4476588)
Genome browser
AA seq
1435 aa
AA seq
DB search
MRTQAGVLFLLAHWVVCSDAWFWSWTGTTTLAPTMEEGSGSPAGSGEQPTEAWGGTQIID
EAHGIQVTGQPWVDTTDSAALTTLIPTTPLENEQSTEKGPMGISSPVLKPEDTGVSLMQL
IGDPPPEEITRVFGPDNSSRYVFGPEANTGQLARAHLPSPFHRDFSLIFNLKPTSDKGGV
VFSVTDASQKIMYVGVKLSPVQGRDQTISLYYTEPGSQRSYEAALFPVPSMRNIWTRFAI
AVRDDKVMLYHNCATEPLVKRIERSPDDMELDTGAGVFVGQAGGADPDKFLGEIEELRLV
GDPRAAERYCDEDEGGDDSDMASGDGSGDDLPRPTRPAVENRRWTTAPPSSGPIPMPPLS
RKEETSVARETGAAGTKGERGDRGDRGEKGDRGPIGSKGESGSGSSSRGGARGEKGEPGE
KGLKGSAGFGYQGKKGDSGPAGPPGPPGPPGTPTEVSVSSDGSVLSAAPGPRGPAGPQGV
AGPGGPPGADGEPGDPGEDGKTGADGPPGFPGTPGDTGTKGEKGGRGEGQPGPRGVPGLP
GPPGSGVRSTFVDMEGSGFPDLESIRGLPGPPGVPGPPGAPGPATAGTALSSGAFGPPGK
DGVPGQPGLSGLPGTDGLPGALGPKGEKGDSAELGLPGVAGEKGDQGNPGLPGRAGESGL
AGLPGPIGPVGQPGPPGPPGPSYRVGFDDMEGSGGGFSNGLPGVRGPEGRQGSPGFPGIP
GKPGLPGMPGQKGSEGAAGREGRSGLDGFQGPQGPKGDAGDQGDRGETGRDGTGLQGPPG
PPGPPGQIVYSTSGNFDGGVGSAGPKGGPGLPGHAGFPGPMGPKGDLGDPGPPGFGVKGE
KGEPGLVIGPDGNLLYLDGLSGLKGDRGPSGPVGPPGQYGPPGIKGEIGMPGRPGRPGVN
GYKGEKGDVTVGTGYSYPGVSGPPGPPGPPGPPGPPTPLDRFNRYDDTSRNYQVKGEKGE
RGDRGVQGIPGTASNFDIYTFKNEMKGQSGDPGVKGEKGEPAGGGYYDQRFGSVPGQPGS
PGKPGLPGPKGDSIIGPSGPQGPQGSPGIGYDGRQGPPGPPGPPGPTSSQPGPYRPNHSV
SVPGPPGPPGPPGNPGSSSGITVLRSYDTMISSARRQAEGSLIYIIDKSDLYLRVRDGLR
QVMLGDYRPFFRDLENEVAEVQPPPVIHYPQSQDRSHNNGAGHYSQGGSAIRPIEPPPQP
AVEPVYPPHYDPRFPDPRQTGQTDGRLAQNTGNRYPVTPQRRPSPALPQPGGHVDGSGTG
LHIIALNAPHTGNMRGIRGADFLCFQQARAVGLKGTYRAFLSSKLQDLHTIVRRSDRESL
PIMNLKDQVLFSSWESIFGDNASKMRDNVPIYSFDGRDIIRDSAWPEKMVWHGSSNKGHR
QTDHYCETWRAGDHAVTGLASSLQSGHLLQQTSSSCSGSYIVLCIENAFVSPSKK
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atgaggacccaggctggagttttgtttttgttggcccactgggtggtctgctctgatgct
tggttctggtcctggactggtaccacaactctggccccaacaatggaagagggctctggc
agtccggcaggtagtggagaacaaccaacagaggcctggggtggaacacagatcattgat
gaggcacatggaatccaagtgactgggcagccgtgggttgacaccactgactctgcagca
ctgaccactttaatacctactacaccactggagaatgagcagtcaacagaaaagggccca
atggggatttcgtcacccgtactcaaacctgaagacactggagtctccctgatgcagctg
atcggggatcctcctcccgaagagatcacccgagtctttgggcccgacaacagttccaga
tatgtctttggccccgaagccaacaccggccagctggcacgcgcccacctgccgagcccg
ttccacagagacttctccctcatcttcaacctgaagcccacctctgacaaggggggggtc
gtcttctccgtcacagatgcctcgcagaagatcatgtacgtgggtgttaaactgtcgccc
gtacagggcagagaccagaccatcagcctgtactacacagaacctggctcgcagcggtcg
tatgaagcagccttgttccccgtgccctccatgaggaacatctggacccggttcgctatc
gctgtgagggacgacaaggtgatgctgtaccacaactgtgccacggagcctttggtgaag
cgcattgagaggtccccggacgacatggagctggacaccggtgctggggtgttcgtcggg
caagctgggggggcggatcccgacaagttcctgggggagatcgaggagctgaggctggtg
ggagacccccgagccgctgagagatactgtgacgaggacgagggcggggacgactccgat
atggcttcaggtgacggaagtggcgacgatttaccgagacccaccagaccggctgtggag
aatcgcagatggacgaccgctcccccgtcctctgggcccattccgatgccgccgctcagc
aggaaagaggagacgtctgttgcaagagagacgggagcagctgggactaaaggagagaga
ggtgaccgcggggacagaggagagaaaggagacaggggaccaatcggctcgaagggagaa
tcaggctccggctccagctctcgggggggagcccgtggagagaagggagaacctggagaa
aagggattgaagggcagcgcaggatttggctaccaaggaaagaagggggattccggcccc
gctgggccccccggcccccccggccctccaggaactccaactgaggtttcagttagcagt
gatggctcagttctttcggcagcgcctggaccccgaggaccagccggaccacaaggtgtc
gcaggccccgggggaccaccaggagctgatggagagcctggtgatcctggtgaggatgga
aaaactggtgctgatggacctccgggcttcccaggaaccccaggtgacactggaaccaaa
ggagagaagggaggccgtggagagggtcaaccgggccctaggggggtcccaggacttccc
gggccccctggatcaggagtcagatctacctttgtggacatggagggttcaggtttcccc
gacctggaatccattcggggactacctggcccaccaggtgtccctggtccccccggggct
cctggtcctgctacagccggcacagccttgagttctggagcctttggtccaccaggaaag
gatggcgtgcctggtcaacctggtttgtctggtttaccgggtactgatggcctcccagga
gctcttggtcccaagggagaaaagggtgattcagccgagctgggtcttccaggagtcgct
ggagagaagggagatcagggaaaccctggtttaccgggacgtgcaggagagtccggactc
gctggtttacctggacccatcggaccggtggggcaacccgggccccccggacctcctgga
ccaagttatcgtgttggatttgatgacatggaaggctcaggaggaggtttcagcaatgga
cttcctggtgtcagaggacctgaaggaagacagggttctcctggttttcctggtattcct
ggtaaacctgggttgcctgggatgccgggtcagaagggcagtgaaggtgctgcaggacga
gaggggcgatctgggctggacggcttccagggacctcaggggccaaagggagacgccggt
gaccaaggcgacaggggagaaacgggtcgagatggaaccggactccagggtccaccaggc
ccacctggaccacccggacaaatcgtctactctacatctggaaactttgacggaggcgtc
ggcagtgctgggccgaagggtggacctggtttacctggtcacgctggattccctggtcct
atgggaccaaagggggacttaggtgacccaggacctcctggctttggggtgaagggagag
aaaggtgagcccggcttggtgatcggacctgatggaaatctcctgtatctggacgggttg
agtggcctgaagggagacagaggaccttctggtcccgttggacctcctggccagtacgga
cctcctggaataaagggtgaaattggaatgcctggaagacctggtcgccctggtgtaaat
ggatacaagggagagaaaggagacgtgacagttggtaccggctatagttaccctggagtc
tctggacctccaggaccgcccggaccacctggacccccagggccacccactcctctggac
cgcttcaaccgatatgatgacacttcaaggaattaccaagttaaaggggaaaaaggagaa
cgtggtgaccgaggagttcaaggaatcccaggaacagcgtctaattttgatatctacaca
ttcaagaatgaaatgaagggacagtctggagatccaggtgtgaagggagaaaagggagag
cctgctggtggtggttactatgaccaacgttttggaagcgtgccgggccaaccggggtct
cctggcaaaccaggcctaccgggtcccaaaggagattccataataggcccctctgggccc
cagggaccacaggggtcaccaggcattggttacgatggacgtcaaggtcctccgggacca
cctggacctccagggcctacaagctcgcagcctggaccatataggcccaatcactccgtc
agtgtccctggacctcctggtcctcctggcccacctggaaatcctggttcctcctctggt
atcacagttttgaggtcgtatgacacaatgatttcttcagccagacgtcaggcagagggc
agcctcatctacatcatcgacaaatcagacctgtatctaagagtacgagatggactgcgc
caagtcatgctcggagactaccgaccattcttcagagatctggagaacgaggtggcagag
gtccagcctccgcctgtaatccactaccctcagtcccaggaccggtcccacaacaacgga
gctggccattactcccagggcggctctgccattcgtcccattgagcctccacctcaacca
gccgtcgaacccgtgtaccccccacactacgatcccaggttcccagaccccagacaaacg
ggtcagacggatggaaggttagcccagaacactggcaacagatacccagtcactccacag
agacgacccagcccggctcttccacagcctgggggccatgtggacggatctggaacagga
cttcacatcatcgccttgaacgcccctcatactggtaacatgcgagggatccgcggggca
gacttcctgtgcttccagcaggcccgagctgtgggcctgaagggaacctacagagcgttc
ctgtcctccaagcttcaagacctccacaccatcgtccgcaggtcggacagggagagcctc
cccatcatgaacctgaaggaccaagtgttgttcagcagttgggagtcgatctttggagac
aacgcgagcaaaatgagggataatgtaccaatctactcgttcgacggtagagatatcatc
agggacagtgcatggccagagaaaatggtctggcatggctcgagcaacaaaggccacagg
caaacagaccactactgtgaaacatggcgagcgggcgaccacgccgtcaccggtctggct
tcatcattacagagcggccacctcctgcagcaaacctccagcagctgctccggctcctac
atcgtcctctgcatcgagaacgccttcgtatcaccctccaaaaaataa
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