Hippoglossus stenolepis (Pacific halibut): 118119964
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Entry
118119964 CDS
T08308
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118119964 (pms1)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
118119964 (pms1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HATPase_c_3
HATPase_c
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
118119964
NCBI-ProteinID:
XP_035030372
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Position
13:3492147..3506979
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AA seq
907 aa
AA seq
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MNQLPRDTVRLLSSSQVITSVLSVLKELLENSLDAGASSIDVKLENYGLDRIEVRDNGQG
IKTADTPVMAVRHYTSKICSHDDLERLETYGFRGEALGSICAVAEVAVTTKTVEDDISIQ
YMLNFTGEIVSQKPSHLGQGTTVSVLKLFKNLPVRRQFYSSSKKCKEELKKVEDLLMAYA
IIKPDLRITLVHNKVVVWQKSKVADHRSALLATLGPSAVANLLPCHYHQEQPEISLEGFF
PKPGADYSSTSSCSPDKTFLFINNRPVHHKDVMKLLRQHYAAQYPGDSASHRYPTLLLKM
TVSPSSVDVNLTPDKTQVLLVNKEAVLTAVEALLVSLYGFKPGSDPSAEKQLGPEMSPSP
LSPSQTDASGLVTERSKDIDVSVANHNDNGITLSAAKGTDLSLPHQTSNSSSSSSVAEDW
IVNQSSFSLYDDEMAQSCTQTTETDSANKSLERLEDNVESVTETNKHQISAEDWSRGTAL
TDPISREPLQPVKILQPSKLNHSDSDELKSHSSSNKKMFNSIMEKRDALTAYDLISNRAI
RAPLSSATLFEKEARAEVLREEPTAGLQDVSVTAQERWKNPREDDHKKSEEKAKQHHDQR
TKLAPAEGPREPSASTPRSHVRSLKRKAPLSNQQLLDELFSAQPQKKMKNPAPKPSQPLP
CSVAALRLQLQRLSSQRSAAPRGLRLVNRLASQNAWVILCGQRLMLLNPFRVEEALLFKR
LLENNILPAESLQNPIQLTDGNLGGAEYTDALCNMEKQSPELDGRSLFSDPRLVANGFKI
KLTPGLTSADRHLEVTAMADCVPFLGVDDLREILTAVLHRKAGTVQESRPLKVTNYLQGE
AVRLARQVTTNLSREDVEEILVRMEQQLGEDSRSCIHGRPFLQHLSDVPVTEQEAQALLT
SELQTPS
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagttgccacgagataccgtgcggctgctgtcgagctcccaggtcatcacctca
gtgttgagcgttttgaaagaactgttggagaactccctggacgccggcgcttcaagcatt
gacgttaaactggagaattatggtttggaccggatagaagttcgtgacaatggccaaggg
atcaaaaccgcagatactcctgtgatggctgtgagacattatacttcaaagatctgtagc
catgacgacctggagcgtctggaaacgtatggcttcagaggagaagcactgggctccatt
tgtgcagtggcagaggtagctgtcaccacgaagacggtggaggatgacatcagcatccaa
tacatgctgaacttcacgggggagattgtctctcagaagccgtctcacttgggtcaaggt
acaacagtgagtgtactgaagctgttcaagaatctcccagtgaggaggcagttctattct
tcgagcaagaagtgcaaagaggagctgaagaaagtagaagacctgctgatggcctatgct
ataatcaaacctgacctgaggatcacgctcgttcacaataaggtggtggtttggcagaag
tccaaggtggccgatcacagaagtgccctccttgctacactggggcccagcgcggtggcc
aacctgcttccatgccactatcaccaggagcaaccagagatctctttagagggttttttc
ccgaagcctggagcagattactcctctacaagctcatgtagccctgacaaaacctttcta
tttatcaacaaccggcccgtccaccataaggatgtaatgaagttgttgcgccaacactac
gcggctcagtatccaggtgattctgcctcacatcgatatcccacccttctgctaaaaatg
accgtttcaccctcttcagtcgatgtcaacctgacaccggacaagacccaggttctacta
gttaacaaggaggctgtgctcactgctgtagaggcattgctggtttctctctatggcttt
aaacctggtagtgatccctcggctgagaaacagctcggccctgagatgtctccttcgcca
ctgagtccttctcagactgatgcttcaggactcgtcactgagcgaagtaaagatatcgat
gtcagtgtcgccaaccacaatgacaatggcatcactttgtctgcggcaaagggcacagat
ctatcactgccccaccagacctcgaacagcagctcttcctcttctgtagcagaggactgg
attgtcaaccagtctagcttttctctttatgatgatgaaatggctcagagctgcactcag
acaacagaaacagactcggcaaacaaatccttggaaagacttgaggacaatgtggagtca
gtgacagaaacaaacaaacaccagatatcagcggaggactggagccgcgggacggctctg
actgaccccatatcacgagaacccctgcagcccgttaaaatcctccaaccctcgaagctc
aatcattccgactcagatgagttaaagagccacagcagctcaaacaaaaagatgttcaac
agcataatggagaagcgggacgctctgaccgcctacgacctgatcagcaaccgtgccatc
agggcgccgctctcttctgccaccttgttcgagaaggaggccagagctgaggtcctgagg
gaggaacccacagccggcctgcaggatgtcagtgtcaccgctcaagagaggtggaaaaat
ccgagggaggacgaccataagaagtctgaggagaaggcaaaacaacaccacgaccaaagg
accaaactggcccctgctgagggccccagagagcccagtgcgagcaccccgaggagccac
gtgcgcagcttgaaacgcaaagccccgctgtccaatcagcagctgctggacgagctcttc
tctgctcagccccaaaagaagatgaagaaccctgcacctaagccctcacagcccctcccc
tgcagcgtggctgcccttcggctgcagcttcagcgcctctcatcccagcgcagcgcagca
ccgcggggcctccgtcttgtaaaccgactggcctctcagaacgcctgggtcattttatgt
ggtcagaggctcatgttgttaaacccatttcgagtggaggaagccttgctgtttaagaga
cttctggagaataatatacttccagctgagagtctgcagaaccctatacagttaacagat
ggaaatctagggggagctgaatatacagatgctttgtgcaacatggagaaacaaagccct
gagctggacggacgcagcctcttctctgatcccaggcttgtagctaatgggtttaaaatc
aaactcactccaggcctcacatcagccgatagacatctggaagtgacagccatggcagac
tgtgtgcctttcctcggtgtggacgacctcagggagatcctgactgcagttcttcacagg
aaggccgggaccgtgcaggagagccggccgctgaaagtaacaaactaccttcaaggggaa
gctgtacgacttgcccgtcaggtgactacaaatctatccagggaagatgtggaggaaatc
cttgtgcggatggaacagcagcttggtgaggacagcaggtcctgcatccacggtcggccg
tttctccagcacctctctgacgtccctgtcacagagcaggaagctcaggctctgctgact
tcagagctgcagacaccttcatga
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