Hippoglossus stenolepis (Pacific halibut): 118119975
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Entry
118119975 CDS
T08308
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118119975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsp03041
]
118119975
03009 Ribosome biogenesis [BR:
hsp03009
]
118119975
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118119975
Spliceosome [BR:
hsp03041
]
Complex A
U1 snRNP components
U1 related factors
118119975
Complex B
118119975
Ribosome biogenesis [BR:
hsp03009
]
Eukaryotic type
Pre-60S particles
Helicases
118119975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
SNF2-rel_dom
BNIP2
Motif
Other DBs
NCBI-GeneID:
118119975
NCBI-ProteinID:
XP_035030393
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All DBs
Position
2:12943113..12951452
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AA seq
636 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGGGNRGGPPPGKFGNPGERLRKKHWNLEELPKF
QKNFYQEHPDVTRRPVQEVDLYRRTKEVTVKGRECPKPIMKFHEAAFPSYVMDVIAKQNW
TEPTSIQSQGWPVALGGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLA
PTRELAQQVQQVAAEYGRASRLKTTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC
SKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFL
KDYVQINIGALQLSANHNILQIVDVCNDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRC
DELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVI
NYDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQM
SEDRGGRGRGGRGGYKDDRRDRYGGGRSNFGGGSYRDREGDRGFGSGPKTTFGGGKAQNG
GAYGGNSGNSSGSYGNNNYSNSNGQGNFGNPANQVGAFGNQSFQGPPQFGAMQRAAQNGM
NHPPFPFNSQAPPPQAQQAPPPPPMMPYPMPPPFPQ
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggttttcagacagagatcgcggcagagatagagggtatggtgggggaccccct
cgttttggtggtggtggtggtggaggaggcaatagaggtggacctcctccaggaaaattt
ggcaaccctggtgagaggctgcggaagaagcactggaaccttgaagagcttcccaagttt
cagaagaacttctaccaggagcacccagatgtcacccgcagaccagttcaagaggttgac
ctgtaccgaagaactaaagaagttacggtcaaaggcagagagtgccccaaaccaattatg
aaattccacgaagctgcatttccaagctatgtcatggatgttatcgccaaacaaaactgg
actgaaccaacctctattcagtctcaggggtggccagttgcccttggtggcaaagacatg
gttggcatcgctcagactggatctggaaaaacccttgcataccttctgcctgcaattgtg
cacatccagcatcagccattcttggagcatggagatggacctatttgcttagtgctggca
ccaacccgtgagctggctcagcaggtgcaacaagtggctgctgaatacggccgggcctcc
cgtctcaagaccacctgcatctacggtggtgcacccaaaggaccccagatcagggacctt
gagaggggtgttgagatttgcatcgctaccccaggtcggctcattgacttcctggagtgt
agtaagactaatttgcgtcgttgcacctatctggtgctggacgaagctgaccgcatgctg
gacatgggatttgaacctcaaatccgcaagatagttgaacaaatccggccagaccgccag
actctgatgtggagtgcaacctggcccaaggaagttcgccagctggctgaggacttcctg
aaggattacgtccagattaatattggagcactacagctcagtgctaatcacaacatcctg
cagatagttgatgtttgcaatgacatggagaaggaggacaaactgatacgtctgctggag
gagatcatgagcgaaaaggagaacaagaccatcatctttgtggagaccaaaaggcgttgt
gatgagctcaccaggaggatgagacgagatgggtggccagcaatgggaattcatggagac
aagagccagcaggagagggactgggtccttaatgagttcagatatggcaaagctcccatc
ctcattgctacggatgtggcctcgcgcggcctagatgtggaggatgtgaaatttgtcatc
aattatgactaccctaactcctccgaggattatatccaccgcattggacgcacagcccgc
agtcaaaaaacgggcacagcatacaccttcttcacccccaacaacatgaaacaagccagt
gacctgatctctgtgctccgcgaggctaaccaggccattaaccccaagctgatccagatg
tcagaggacagaggaggtcgtggaagggggggaagaggtggctacaaggatgaccgtcgt
gataggtatgggggtgggaggagcaattttggcggtggcagctacagggatagggagggc
gatagaggctttggcagtgggccgaagactaccttcggtggcggcaaggcccaaaatggg
ggcgcctatggaggcaacagtggtaactctagtggcagctatggcaacaacaattatagc
aacagcaacggacagggtaatttcggtaatccggcaaaccaggtgggtgcctttggtaac
caaagctttcagggcccccctcagttcggggccatgcagagggctgctcagaatggaatg
aaccacccgccattcccattcaactctcaggccccaccaccacaggcccagcaggcacca
cctccaccacccatgatgccatacccaatgccgccaccttttccacagtag
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