Hippoglossus stenolepis (Pacific halibut): 118119983
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Entry
118119983 CDS
T08308
Symbol
hspd1
Name
(RefSeq) 60 kDa heat shock protein, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118119983 (hspd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118119983 (hspd1)
03110 Chaperones and folding catalysts [BR:
hsp03110
]
118119983 (hspd1)
03029 Mitochondrial biogenesis [BR:
hsp03029
]
118119983 (hspd1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsp04147
]
118119983 (hspd1)
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
118119983 (hspd1)
Messenger RNA biogenesis [BR:
hsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
118119983 (hspd1)
Chaperones and folding catalysts [BR:
hsp03110
]
Heat shock proteins
HSP60 / Chaperonin
118119983 (hspd1)
Mitochondrial biogenesis [BR:
hsp03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
118119983 (hspd1)
Exosome [BR:
hsp04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
118119983 (hspd1)
Exosomal proteins of other body fluids (saliva and urine)
118119983 (hspd1)
Exosomal proteins of breast cancer cells
118119983 (hspd1)
Exosomal proteins of colorectal cancer cells
118119983 (hspd1)
Exosomal proteins of bladder cancer cells
118119983 (hspd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
DUF4777
Motif
Other DBs
NCBI-GeneID:
118119983
NCBI-ProteinID:
XP_035030404
LinkDB
All DBs
Position
13:2161163..2167102
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AA seq
575 aa
AA seq
DB search
MFRLPTVMKQVRPVCRALAPHLTRGYAKEVKFGADARALMLQGVDLLADTVAVTMGPKGR
NVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
RAIAKEGFDTISKGANPVEIRRGVMMAVETVINELKVLSRPVTTPEEIAQVATISANGDV
EIGTIISNAMKKVGRKGVITVKDGKTLHDELEIIEGMKFDRGYISPYFINSPKGQKCEFQ
DAYLLLSEKKISTVQSIVPALELANQHRKPLVIVAEDVDGEALSTLVLNRLKVGLQVVAV
KAPGFGDNRKNQLKDMAVATGGTVFGDEALGLALEDIQAHDFGKVGEVQITKDDTLLLKG
GGSPAEVDKRAAEILEQLESTDSDYEKEKLNERLAKLSDGVAVLKIGGTSDVEVNEKKDR
VTDALNATRAAVEEGIVPGGGCALLRCIPCLDSIQTANSDQKIGVDIIRRALRIPAMTIA
KNAGVEGSLVVEKILQSSDEIGYDAMLGEYVNMVEKGIIDPTKVVRTALLDAAGVASLLA
TAEAVVTELPKEEKEMPGGMGGMGGMGGMGGGMGF
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgtctaccaacagtcatgaagcaggtgaggcctgtgtgccgggcgctggcccct
cacctcacacgaggctacgccaaggaggtgaagttcggagccgacgctcgcgccctcatg
ctgcagggggtcgacctgctggctgatactgtggccgtcaccatgggtccaaagggtcgt
aatgtcatcatcgagcaaagctggggcagccccaaggtcaccaaggacggcgtgacggtg
gccaagagcatcgacctgaaggacaagtacaagaacatcggtgccaagctggtgcaggat
gtggccaacaacaccaacgaggaggccggtgacggcaccaccaccgccacagtgctggcc
cgcgccatcgccaaggagggcttcgacaccatcagcaaaggagccaaccccgtggagatc
cgacgcggagtcatgatggccgtggaaaccgtcatcaacgagctgaaggtgctctccagg
ccggtgacgacgccagaggagatcgcacaggtcgctacaatctcagccaatggagacgtg
gagatcggtaccatcatctccaacgccatgaagaaagtcggccgcaagggagtcatcact
gtcaaggacgggaagacgctgcacgatgagctggagatcatcgaggggatgaagtttgac
cgcggctacatttccccgtatttcatcaactctcccaaaggtcagaagtgcgagttccag
gacgcctacctgctgctgagcgagaagaagatctccaccgtccagagcatcgttccagct
ctggagctcgccaaccagcaccgcaagccactggttattgtggcggaggatgtggatgga
gaggctctcagcaccttggtcctcaacaggctgaaggtcgggcttcaggtggtcgctgtc
aaagccccgggcttcggagacaacaggaagaaccagctgaaggatatggccgtggccacc
gggggcactgtgttcggggatgaggctctgggtctggccctcgaagacatccaggctcac
gacttcggtaaagtcggtgaggtgcagatcaccaaagacgacacgttgctgctgaaggga
ggcggcagccccgcggaggttgataaacgtgcagcggagatcctcgagcagctggaaagc
accgacagcgactacgagaaggagaaactcaacgagaggctcgccaagctgtccgacgga
gtcgctgtgctcaagatcggaggaacgagtgatgtggaggtgaacgagaagaaggaccgc
gtgaccgacgctctgaacgccacccgggccgctgtggaggaggggatcgtacccggtgga
ggctgcgctctgcttcgctgcatcccttgtctcgatagcatccaaactgccaactctgac
cagaagatcggtgtggacatcatcaggcgggcgctgcgtatccccgccatgaccatcgct
aagaacgccggcgtggagggttctctggtggtggagaagatcctccagtcatcagatgag
atcggctacgacgccatgttgggagagtacgtcaacatggtggagaagggcatcatcgac
cccaccaaggtggtgaggacggcgctgctggacgctgcaggcgtggcttctctgctcgcc
accgccgaggccgtcgtcacggagctacccaaagaggagaaggagatgcccggtggtatg
ggaggcatgggtggaatgggcggcatgggaggaggcatgggtttctaa
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