Hippoglossus stenolepis (Pacific halibut): 118120072
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Entry
118120072 CDS
T08308
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
118120072 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118120072 (ddx3xa)
03041 Spliceosome [BR:
hsp03041
]
118120072 (ddx3xa)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118120072 (ddx3xa)
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118120072 (ddx3xa)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118120072 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
118120072 (ddx3xa)
Spliceosome [BR:
hsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
118120072 (ddx3xa)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
118120072 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AdHead_fibreRBD
Motif
Other DBs
NCBI-GeneID:
118120072
NCBI-ProteinID:
XP_035030633
LinkDB
All DBs
Position
13:1256454..1270420
Genome browser
AA seq
821 aa
AA seq
DB search
MSHVVIDNPHGLDQQLAALDLNSADGQGGGTGRRYIPPHLRNREAPKNAGNAYSAGRQCG
YSVAPVNLFSPKQCPQPWQAECQQRQSNNFTSGWDDCKIGYPRLAYQELAFYHAYSGGWR
NRCASSVCTDNCVTTDGNDDTASVHSWADQCDSPGWDGGRSNGFVNGFHDNRTNGSYGGR
GPPRNDRGGRGAYRGNRGGGSFNQPLQNAGVGGFENKDGNWGGAPRDAAYNSFGGRTDSR
SKSTFFNERGGGGGGSRGRYERGGFSSGGNNRWEESRDEDWSKQTPPNERLEAELFSASN
TGINFEKYDDIPVEATGANSPPHIDSFHDVELGEIIMANINLSRYTRPTPVQKYAIPIIK
SKRDLMACAQTGSGKTAAFLLPVLSQIFTEGPGEALQAAKNGQDNGRYGRRKQYPLSLVL
APTRELALQIYDEARKVAYRSRVRPCVVYGGADIGGQIRELERGCHLLVATPGRLVDMME
RGKIGLDYCNYLILDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQIL
ARDFLEDYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNATVIPSEETETPEKPA
KASLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALNQFRSGRCPILVATA
VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNSNITKDLLDI
LVEAKQEVPPWLESLAYEHQHKSNPRGRSKRFSGGFGARDYRQTPGGAATFASSRGGRNP
GGSRGFGGGGFGGGGGGGGFYGNDSYGGNYSNSGSVDWWGN
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcattgataatccacacggtctagatcagcagctcgctgccctagac
ttgaactctgctgacggacaaggcggaggaactggccggcgttacattccacctcacctg
aggaacagagaggctccaaaaaacgcaggaaatgcttattccgctggtagacagtgcggt
tattcagtggcaccagtaaatctcttttctcctaagcagtgcccacaaccatggcaggca
gagtgtcagcaaaggcagagcaataactttacgtcaggatgggatgactgtaagattggt
tacccaagactggcctatcaagagcttgccttttaccatgcctacagtgggggctggcga
aacagatgtgcctcctcagtctgcactgataactgtgtgaccaccgatgggaacgatgac
acagccagtgtccacagctgggcagatcaatgtgactcacctgggtgggacggaggacgt
agcaacggatttgtgaatggtttccacgacaatcgcactaatgggtcatatggaggccgc
ggaccccctcgcaatgatagaggtgggcgcggtgcctaccgtggtaacaggggtggaggc
tcctttaatcaaccactgcaaaatgcaggagttggcggttttgaaaacaaagacggcaac
tggggaggagctcccagggacgctgcctacaacagctttgggggacgcactgatagtagg
tccaagtcgaccttcttcaatgagcgtggaggcggcggcggcggctccaggggaagatat
gagcgcggaggcttctcaagtggaggaaacaaccgctgggaggagtccagagatgaggat
tggtccaagcagactcctcctaatgagcgtctggaagcggagcttttttctgcaagcaac
actgggataaattttgagaaatatgacgatattcctgtggaggccactggggccaactcc
ccgcctcatattgatagtttccatgatgtggaattgggggagattatcatggcgaacatc
aacctgagtcgctacacccgtcccacccccgttcagaaatatgctatccccatcatcaag
tccaaaagagacctgatggcctgcgcccagactggctctggcaagactgctgccttcctg
ctacccgtgctgagtcagatcttcaccgaaggaccaggagaagctctgcaggccgccaag
aatggacaggacaacggaaggtacggccgtcgtaaacagtacccgctttccctggtcctg
gctccgaccagagaactggccttgcagatctatgacgaggcgaggaaggttgcctatcgc
tctcgtgtgcgtccctgcgtagtttatggtggagctgacatcggtggacagatcagggaa
ctggagagaggctgtcatcttcttgtggccacacctggacgtctggtcgatatgatggag
aggggcaagatcggtctggactactgcaactacctgatcctggacgaggctgaccgcatg
ttggacatgggttttgagccacagatcagacgtattgtggaacaggatacgatgccacct
aaaggcattcgtcagaccatgatgttcagtgccaccttccctaaggagatccagattctg
gctcgtgatttcctggaggactacattttcctggcggtgggtcgcgttggttccacttca
gaaaacatcacccagaaggtggtttgggtggaagaaaatgacaagaggtccttcctcttg
gatctgctcaacgccacagttattcccagtgaggagacagagaccccagagaaaccggca
aaagcgtcattgactctggtgttcgtggaaaccaagaagggagccgatgccttggaggac
tttctgtaccacgaaggttacgcctgcaccagcatccacggggaccgatcccagagagac
agagaagaggccctgaatcagttccgatccggacgctgccccatcttagtggctacagct
gtggctgctcgaggtctggacatctccaatgtgaagcatgtcattaactttgatttgccc
agtgacattgaggagtacgttcaccgtatcggccgtacgggacgtgtgggcaaccttggt
ctggccacgtcgttctttaacgacaaaaacagcaacataaccaaagacttgctggacatc
ttggtggaggccaagcaggaggttcccccctggcttgagagtctcgcctacgagcaccag
cacaagagcaacccccgtggacgctccaagaggttctcaggcggtttcggagctagagat
taccgtcagacgcccggtggcgctgcaaccttcgctagcagccgtggagggagaaaccct
ggaggaagccgtggctttggcggcggtggcttcggtggtggtggcggcggcggtggcttc
tacggcaacgacagctatggaggaaactacagcaactctggtagcgtggattggtggggc
aactag
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