Hippoglossus stenolepis (Pacific halibut): 118120096
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Entry
118120096 CDS
T08308
Symbol
slit2
Name
(RefSeq) slit homolog 2 protein isoform X1
KO
K06839
slit 2
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118120096 (slit2)
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Axon guidance molecules
118120096 (slit2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
EGF
LRR_4
LRR_5
Laminin_G_2
Laminin_G_1
LRRNT
LRR_9
LRRCT
hEGF
EGF_TEN
LRR_1
LRR_14
EGF_DL_JAG
JAG1-like_EGF2
EGF_Teneurin
Laminin_G_3
LRR_EndoS
Motif
Other DBs
NCBI-GeneID:
118120096
NCBI-ProteinID:
XP_035030693
LinkDB
All DBs
Position
2:complement(17292244..17380950)
Genome browser
AA seq
1599 aa
AA seq
DB search
MVGALSPVGPGRSPATAPGLPLLLTAVLVLVLSSGAGGQPCPTQCSCTGTTVDCHGQGLR
SVPRNIPRNTERLDLNANNLTKITKTDFAGLRHLRVLQLMENKIFTIERGAFQDLKELER
LRLNRNNLAIFPELLFLGTTKLYRLDLSENQIQGVPRKAFRGAVEIKNLQLDYNHISCIE
DGAFRALRDLEVLTLNNNNISRLSVASFNHMPKLRTFRLHSNNLQCDCHVAWLSEWLRQR
PRLGLYTQCMAPPHLRGHNVAEVQKKEFVCTDEDEGHQSSSSSSCSVLQCPESCTCSNNI
VDCRGKGLTEIPTNLPETITEIRLEQNAIKVIPAGAFSSYKKLRRIDLSNNQISELAADA
FQGLRSLNSLVLYGNKITEISKGLLEGLFSLQLLLLNANKIACLRVDAFQDLHNLNLLSL
YDNKLQTIAKGTFASLRAIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSGARCTSPRRL
ANKRIGQIKSKKFRCSAREQYFIPGVHHVGCTEDYRSKLGGDCFADLACPEKCRCEGTTV
DCSNQKLTKIPDHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINLSNNRITDIEEGT
FEGASGVNELILTSNRLENVHHRMLKGLSGLRTLMLRSNRLSCVSNSSFVGLSSVRLLSL
YDNQITSMNPGAFDTLHSLSTLNLLANPFNCNCHLAWLGDWLRRKRIVTGNPRCQSPYFL
KEIPIQDVAVQDFACEDGNDENSCSPVLRCPAECSCLDTVVRCSNKGLSTLPKGLPKETT
ELYLDGNHFTQVPAELSEYKHLTLIDLSNNQISTLSNHSLSNMSELLTLILSYNRLRCIP
VRAFDGLKSLRLLSLHGNDISLIPEGAFKDLSSLSHLALGANPLYCDCHMQWLSDWVKSG
YKEPGIARCAGPGDMTDKLLLTTPSKKFTCTEVPGPCGFLVPGPVDMSIQAKCEPCLSNP
CKNDGTCSNDPVHYYRCTCPYGFKGQNCEEPIHACIGNPCQNGGTCHLKEGEESNFWCVC
PEGFEGDACEINIDDCEDNDCENNSTCVDGINNYTCMCSPEYTAATNEVERGELCEEKLD
FCAPELNPCQHDSKCILIPQGYKCECTPGYVGENCELDFDDCEENKCQNGGQCIDAVNGY
TCVCPEGYSGLFCEFSPPMVLPRTSPCDNHECLNGAQCVVVETDPRCQCLQGYEGESCET
LVSVNFVNRESYLQLPSSLLSPQTNISLQIATDEDSGVLLYKGDNDHIAMELYRGRLRVS
YDTGSYPPSAIYSVETVNDGSFHAVELVASDQTLSLSIDGGTPKSINSISKQSTLNIDSP
LYLGGMPERASASGGLSALQHSSGGRNGTSFHGCLRNLYINGKLQDLGAGFGPGAPGSGT
AQSTTSQWLGQGVEPGCQPCQRGACPQGDCHATGHRGFTCTCHPGWTGALCDQQVNNPCD
GNKCIHGTCLPINSYSYSCRCQPGFAGVLCDEQDQDPANPCSLSRCKHGKCRVSGLGKAY
CECNSGYTGEACDREVACRGERIRDVYQRQQGYAACQTQEKVSRLECRGSCTGGAEGQGT
CCTPLRSKRRKYTFQCTDGSSFVQEVEKVVKCGCTKCPS
NT seq
4800 nt
NT seq
+upstream
nt +downstream
nt
atggtgggagctctgagccccgttggccctggccgctccccggcgactgctccagggctg
ccgctgctgctgacggctgtcctggtcctggtgctgtccagcggagcaggcggccagccc
tgcccgacccagtgctcctgcaccggcaccacagtggactgtcacggccaagggctccgc
agcgtgcccaggaacataccccgcaacacggagagactggatctgaatgcaaacaacctc
actaagatcacaaagacggattttgcaggactgaggcatctgcgagtgctgcagctaatg
gagaacaaaatcttcaccatcgagagaggagccttccaggacctgaaggagctggagaga
ctgcgcctgaatcggaataatctggccatctttcccgagctgcttttcctgggaacgacg
aagctctacagacttgatctcagcgagaaccagatccagggggtcccaaggaaagccttc
aggggagctgtggagatcaagaacctccagttggactacaaccacatcagctgtatcgag
gatggagctttccgagcattgcgtgacctggaagtgctcaccctcaacaacaacaacatc
agccgactgtctgtggccagtttcaaccacatgccaaagctcaggacctttcgcctgcac
tccaacaacctgcagtgtgactgtcacgtggcctggctgtcggagtggctgcgacaacgc
ccccgtctgggtctttacacgcaatgcatggcccccccacacttgaggggacacaacgtg
gcagaggtgcagaagaaggagtttgtgtgcacagatgaagacgaaggtcaccagtcgtcc
tcgtcctcgtcctgcagtgtgttacagtgcccggagtcgtgcacctgcagtaacaacatc
gtggactgcagagggaagggactgacagaaatacccaccaacctgcctgaaaccattact
gagatccgactggagcagaacgccatcaaggtgatcccagctggagccttttcttcgtat
aagaagctgcgcaggatagatttgagtaacaaccagatatcggagctggccgcggacgcc
ttccaaggtctgcgctccctcaactctctggtactatatgggaacaagatcactgagatc
tccaaaggactgcttgagggactattttctctgcagctattgttactgaatgccaataag
atagcgtgtctgcgagtggatgcatttcaggacctccacaacctcaatctgctctcgctc
tatgacaacaagctccagaccatcgccaagggaactttcgcctcgctaagagccattcaa
acgcttcacttagcccagaacccgttcgtctgtgactgccatctgaagtggctggctgac
tacctgcaggacaatcccatcgagaccagcggtgctcgctgcaccagcccgcggcggctc
gccaacaaacgaatcggacaaatcaagagcaagaagttccgctgctcagctagagaacag
tatttcattccaggagtacaccatgtcggctgtactgaggattaccgcagcaagctcgga
ggggactgcttcgccgacttggcctgccccgagaagtgtcgctgcgagggcaccacggtc
gactgctccaaccagaaactcaccaaaataccagatcacattccccagtacaccgcagaa
ctgcgcctcaacaacaatgaattcactgtgctggaggcgacggggatcttcaaaaagttg
cctcagttgaggaagattaacctgagcaataaccgtatcactgacatagaggaggggaca
tttgaaggagcctcaggggtgaacgagctgattctcacctccaacagactggagaacgta
caccaccgcatgctgaagggactgagtggcctccgcacacttatgctgaggagcaatcgt
ctcagctgtgtgagtaacagcagcttcgtggggttgagctcggtgcgtctcctgtcgctc
tatgacaaccagatcacctctatgaaccctggagccttcgacacactgcactccctgtcc
acgctaaatcttctggccaatcccttcaactgtaactgtcacctggcttggctcggcgat
tggctgaggaggaaacgcatcgtcactggtaaccctcgctgccagagcccttacttcctg
aaggagatccccatccaggacgtagctgtccaggactttgcctgtgaagatggtaacgat
gagaacagctgttctccggtgctgaggtgtcccgcggagtgctcctgtctggacactgtg
gtgcgctgcagcaacaaggggctcagcacgctgcccaaaggcctccccaaagagaccact
gagctgtacctggatggtaaccacttcactcaggttcctgcggagctctccgaatacaaa
cacctaacgctgattgacttgagtaacaaccagatcagcacattgtccaaccacagcctc
agtaacatgtccgagctgcttaccctaatcctcagctacaaccgtctgcggtgtatccca
gtgagagcgttcgatggactcaagtctctacgtctgctgtctctccatggtaacgacata
tcactgataccagagggagctttcaaagacctgtcatcactctcccacttggctctgggt
gccaaccctctgtactgtgactgccacatgcagtggctgtcagactgggtgaagagcggc
tacaaggagcctggcatcgcccgctgtgccgggcccggagacatgaccgacaaactgctg
ctcaccacgccgtccaagaagttcacctgcacagaagtcccggggccttgtggttttctg
gtgccaggtccagtagacatgagtatccaggccaagtgtgagccctgcctgtccaacccc
tgcaagaacgacggcacctgctccaatgaccctgtgcactattaccgctgcacctgcccc
tacggatttaagggccaaaactgtgaggagcccattcacgcctgcattgggaacccctgc
cagaatggtggaacctgccatctgaaggaaggagaagagagtaacttttggtgtgtgtgt
ccggagggcttcgaaggtgacgcatgcgagatcaacatcgatgactgtgaagacaacgac
tgtgagaacaactccacctgtgttgatggaatcaacaactacacgtgcatgtgctcccca
gaatacacagctgctaccaatgaggtggagagaggcgagctgtgtgaagagaaactggat
ttctgtgctccggagctgaacccgtgtcagcacgactcaaagtgcattttgatcccacag
ggatacaagtgtgagtgtactccgggctacgtaggtgagaattgtgagctggactttgac
gactgtgaagagaacaagtgtcagaacggaggtcagtgcattgatgccgtcaacggatac
acctgcgtctgtccagagggctacagcgggttattctgtgagttctctcccccgatggtc
cttccccgcaccagcccctgcgacaaccacgagtgtctgaacggggcgcagtgcgtcgtc
gtggaaaccgacccccgctgccagtgtctccagggctatgagggcgagagctgcgagacg
ctcgtcagtgtcaactttgttaaccgcgaatcctacctgcagcttccctccagtctcctc
tcaccacagaccaacatcagccttcagatcgccacagatgaggacagcggcgtgttattg
tacaaaggggacaatgaccacattgccatggagctgtacaggggacgcctgcgggtcagc
tacgacaccgggtcctaccctccttctgcgatatacagtgtggagacagtgaatgatggc
agttttcatgcggtggaattagtagcatcagaccagactctgtctctgtccatcgacggt
gggacgcccaaatccatcaactccatcagcaaacaatccacgctcaacatagactctcca
ctttacctgggagggatgccggagcgtgcgtcagcctcggggggtctgtcggccctgcag
cacagctcaggtggacgcaacggcaccagcttccacggctgccttcgtaacctgtacata
aacgggaagctccaggacctgggggctgggtttgggccaggggctccaggctctgggaca
gcacagagcaccaccagtcagtggctgggccaaggagtggagccaggctgccagccgtgc
cagagaggtgcctgtccccagggtgactgccacgccacaggtcaccgaggcttcacctgc
acgtgccacccgggctggacgggagcactatgtgaccagcaagttaacaacccctgtgat
ggcaataagtgtatccatggcacgtgccttccaatcaactcctactcgtactcctgccgc
tgccagcctggttttgccggcgtcctctgcgatgagcaggaccaggaccctgctaatccc
tgcagtctgtctcgctgcaaacacggtaaatgccgggtgtcaggcctgggtaaagcatac
tgcgagtgtaacagtggatacacaggagaggcgtgcgacagagaggtggcctgccgaggg
gaacggatccgagatgtctaccagagacagcaaggctacgcggcgtgccaaacccaggag
aaggtctcccgtctagagtgtcggggcagctgcacggggggagcagaaggacaaggcacc
tgctgcacccccctccgcagcaaacgcaggaaatacaccttccagtgcactgacggctcg
tcttttgtccaggaagtggagaaagtggtcaagtgcggctgtacaaagtgcccctcgtaa
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