Hippoglossus stenolepis (Pacific halibut): 118120142
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Entry
118120142 CDS
T08308
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X2
KO
K16474
intraflagellar transport protein 88
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
hsp03037
]
118120142 (ift88)
Cilium and associated proteins [BR:
hsp03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
118120142 (ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_8
TPR_12
TPR_19
TPR_6
TPR_14
TPR_16
TPR_7
TPR_11
ANAPC3
TPR_9
TPR_17
ARM_TT21_5th
TPR_CcmH_CycH
TPR_10
MIT
ARM_TT21_4th
TPR-S
DUF2225
ARM_TT21_C
HAT_PRP39_C
ARM_TT21_2nd
TPR_MalT
TPR_15
RPN7
SHPRH_helical-1st
Consortin_N
FumaraseC_C
Motif
Other DBs
NCBI-GeneID:
118120142
NCBI-ProteinID:
XP_035030766
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All DBs
Position
13:21099563..21118156
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AA seq
862 aa
AA seq
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MENVHLALEEEDLYSGYNDYNPTFDSEELENDAGFQQAVRTSHGRRPPMTAKFPGTAIGA
RPLGTSFGSRIPMTSSMGRPVTGAVQDGAARPMTAVRAAGYTSSLTRGSTFDPLGQSRGP
APSLEAKNEDTPEEKIKILEKKVNDLIEESCMAQSIGALQLSLEKAKEAGRKERALVRQR
EQTGNADHINLDLTYSVLLNLANQYENNEMYPEALNSYQVIVKNKMFNNAGRLKVNMANI
YFKQKNYPKAIKFYRMALDQISNAHKEMRIKIMQNIGVVFVRMGQYSDAITSFEHIMSES
PNIKTGFNLILCYYAIGDRERMKKAFQKLISVPLGIDDDDKYIPSNDDTSSNMVIEAIKN
DKLHQMERDLKVLAEKYIMTAAKLIAPTIETSFATGFDWCVDMVKSSQYVELANDLEINK
AITYLRQKDFNQAVETLKTFEKKDSRVKSAAATNLSFLHFLEKEYEQAERYADLAMTADR
YNPAALINKGNTLFVKQDYEKAAEFYKEALRNDSSCTEALYNLGLSYKKLNRLEEALDCF
LKLHAILRNSAQVMYQLAHLYELLEDSQQAIEWLMQVISVTPTDPQALAKLGELHDGEGD
KSQAFQYYYDSFRYFPSNIDVIEWLGAYYIETQFCEKAIQYFERATLIQPTQVKWQLMVA
SCYRRSGNYQKALETYKDIHHKFPENVECLRFLVRLCTDMGLNEVQEYATKLKKVEKMKE
MREQRVKSGREGSARGRREGREGSGGSAGPSTSVLTSPKKARVMEDVKAVAQSESKQLSP
LLDSGKDSSHSSNSTKGERLSARMRSLPASNEPYEANSPKELDASYVDPLGPQMERPKTG
AKKRVEDDDFADEELGDDLLPE
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgtgcatctggctctggaggaggaggacctctactccgggtacaacgactac
aatccaacatttgactccgaggagttggagaatgatgcaggcttccagcaagcagtgagg
accagtcatggaagaagacccccgatgactgccaaatttcccggcactgccattggagct
cggcctttagggacttcatttggatctcggatccctatgacatcttcaatgggcagacct
gtgactggagctgtgcaggacggagccgcccgaccaatgactgctgtaagagccgcaggt
tacacctcctccctgactcgtggctcaacttttgaccctctgggacagtccagaggcccc
gccccttcactagaagccaagaatgaggatacgcctgaggagaagataaagatcctggag
aagaaagtgaatgacttgatagaagagagctgcatggcacagagcattggagccttacaa
ctgtctcttgaaaaagccaaggaggcagggaggaaggagagagcactggtgagacagagg
gaacagactggaaatgctgaccacatcaatttagacctcacctactcggttttgctcaac
cttgccaaccagtatgagaacaatgaaatgtaccccgaggccctaaacagctaccaggtc
attgtgaagaacaagatgttcaataatgcaggccgactaaaggtcaacatggccaacatc
tacttcaaacagaaaaactaccccaaagccatcaagttctacagaatggcgctggatcag
atctccaacgctcacaaagaaatgaggatcaagatcatgcagaacatcggcgtggtcttt
gttcgcatgggtcagtactcggatgccattacatcgttcgaacacatcatgagcgagagc
cccaacattaagacgggcttcaacctcatcctgtgctactacgccatcggtgacagggag
aggatgaagaaggcctttcagaagctcatttcggtccctctgggcatcgatgatgacgac
aaatacatcccatctaatgacgacaccagttccaatatggtcattgaggccattaagaat
gacaagcttcaccagatggagagagatctaaaagtcctggctgagaaatacatcatgact
gcagccaaactcatcgctccgactattgagacctcctttgccactggatttgactggtgt
gtggacatggtgaaaagttctcagtacgtcgagctagccaatgatcttgagatcaacaaa
gccatcacctatctcagacagaaggacttcaaccaggcagttgaaaccctgaaaacattc
gagaagaaggacagcagagtgaagagcgctgcagccaccaacctttctttccttcacttc
ctggagaaggaatatgagcaggctgagcgctacgctgacctcgccatgaccgccgatcgc
tacaatccagcagcactaatcaacaagggcaacaccctgttcgtcaaacaggactatgag
aaggctgcagagttctacaaagaagcgctgaggaacgactcctcctgcaccgaggccctc
tacaacctgggtctatcctacaaaaaactgaatcgcctggaggaggctctggactgcttc
ctgaagctccatgccattctgaggaacagtgcccaggtcatgtaccagctggctcatctc
tatgagcttctggaggattcccaacaggccatcgagtggttgatgcaggtcatcagtgta
actcccacagacccacaggcactggccaagctgggggagctgcacgatggcgagggggac
aagtcccaggcctttcagtactactatgattctttcagatacttcccctccaacatcgat
gtgattgagtggctcggggcgtattacatcgagactcagttttgtgaaaaagccattcag
tactttgaaagagccacactcattcaaccaacccaggtgaagtggcagctaatggtggca
agctgctacagaagaagtggaaactaccagaaagctctggaaacatataaagacatccac
cacaagtttccagaaaatgtggaatgtctgcgtttcctggtgaggctgtgcacggacatg
ggactgaatgaagttcaagaatacgccaccaagctgaagaaggtggagaagatgaaggag
atgagagaacagagagtgaagtcgggcagagagggaagtgccagaggtcggagagaaggc
agagagggcagcggcgggagtgccggcccctccacatctgtcctcacctctcctaagaag
gccagagttatggaggacgtcaaagcagttgctcagtctgagtctaaacaactcagtcca
ctgttggactcagggaaagacagcagccacagtagcaacagcactaagggagagcggctg
agcgccaggatgaggtcacttcctgcctccaacgagccctacgaggccaacagcccaaaa
gaactggatgcgtcctacgtggatccactggggcctcagatggagaggccgaagacaggg
gccaagaagcgagtggaggatgacgacttcgcggatgaagagctgggagacgacctgctg
cccgagtag
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