Hippoglossus stenolepis (Pacific halibut): 118120249
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Entry
118120249 CDS
T08308
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118120249 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsp03041
]
118120249 (prpf40a)
Spliceosome [BR:
hsp03041
]
Complex A
U1 snRNP components
U1 related factors
118120249 (prpf40a)
Complex B
118120249 (prpf40a)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
BIRC6
Motif
Other DBs
NCBI-GeneID:
118120249
NCBI-ProteinID:
XP_035030915
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Position
13:complement(11351593..11363878)
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AA seq
879 aa
AA seq
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MSSSEANNGPSQAPPYPGVPPSGIPPPFMGPPGIPPHFPPMGMPMGQRPPSMTPMPPGII
PPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRMPAAAVQPTGPPGVDSTAAAPGTASTTN
GSPPEDQPKKKSLWTEHKSLDGKTYFYNTETKQSTWEKPDDLKSPAEQMLSKCPWKEYKS
DTGKPYYYNSQTKESRWTKPKDLEDLEAMIKAEENGTAEAMVPSITTAAPAVLADNTAAM
ATVMEVETATAVPEENLSQAAVHLTAEVKTADAPVALSESAAATEAAASVEVPKEERPEL
QKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHDKMTSTTRYKKAEQMFCEQEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNRESFQKFLDELHD
HGQLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKSFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKNMLKQATPPLEPEASWEAVRERFLKESAFEDVTLESERKRIFKDFMHVLEHE
CQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDEEYHKKKKRSQSKSPSERSSSGESERS
YKKSKKHKKKGKKRRHKSGSPESENEKKGRERDGKREKDLEKDKENDKSRGKSHSDSKQK
SPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggaggctaataatggcccgagtcaagcgccaccttacccaggtgtaccg
ccctcagggatacctcccccatttatgggaccacctggaataccgcctcatttccctcca
atgggaatgcctatgggacagcgacctcccagcatgactccaatgcctcctggaataatt
ccaccgggtataatgccaccaatgggggcacctccgatgggacagatgccaggcatgatg
ccacccatgatgccagggatgatgatgccccctcgcatgccagctgcggctgtgcagcca
acgggaccgccgggtgttgactccacagctgctgcacccggaacagctagtaccacaaat
ggatctccaccggaagatcagccaaagaagaagtctctgtggaccgaacacaaatctctt
gatggcaagacctacttctacaacacagagaccaagcagtccacgtgggagaaaccggat
gatctcaaatctcctgcagaacaaatgctgtctaaatgcccttggaaggagtacaagtcg
gacacagggaagccttattattacaactctcagacgaaggagtccagatggaccaaaccc
aaagacctggaggatctggaagctatgatcaaagcagaggagaacggaacggcagaggcg
atggtccccagcatcaccacagcagctcctgcagtgctggcagataatacagctgctatg
gcgactgtaatggaagtggaaactgctacagcggtcccagaagaaaacctctcccaggcg
gctgtgcatctcacagctgaggtcaagactgcagacgctcctgttgccttgtcagagagc
gcagctgccacagaggccgcagccagtgttgaagttccaaaggaagaacggccagaactt
cagaagaaaacttacaaatggaacacaaaagaagaggccaagcaggccttcaaagagctg
ctgaaggagaagggtgtgtcctcaaactcctcctgggaacaggccatgaaaatgattatc
aatgatcctcgctacagcgcactgcccaaactgagcgagaagaagcaggcgtttaatgct
tacaaagtccagacagagaaggaagagaaggaggaggccagaattaaatacaaggagtcc
aaagaaacctttcagaggttcttggaaaaccacgacaagatgacatctaccaccagatac
aagaaagcggaacagatgttttgtgagcaggaggtgtggagctgcgttccagagagagac
agactggagatctatgaggatgtgttgttctacctcgcaaagaaagagaaggaacaagcc
aagcagctgagaaagaggaactgggaagctctgaagaacatcctggacaacatggctaat
gtgacctaccgcaccacctggtccgaggcccagcagtacctgctagataaccccacgttt
gctgaagacgaggagctgcagaatatggacaaggaggatgccctcatctgtttcgaggag
cacatccgggcgctggagaaggaggaggaggaagagaaacagaagactcttctcagggag
aggagacgccaacgaaagaacagagagtcattccagaaattcttggatgagctccatgac
catggccagcttcactccatgtctgcctggatggagatgtacccgaccctgagctctgac
atccgctttgccaacatgctgggccagccgggttccactcccctggatctgtttaaattt
tatgtggaagacttaaaggctcgttaccacgacgaaaaaagaatcatcaaggatattctt
aaggacaaaagcttcctggttgaagtgaacaccagctttgatgactttggatcagtcatc
agctcagataagagagccaccaccctggatgcaggaaacataaagctggcctttaacagc
ttactggagaaggctgaagccagagagagggagcgagaaaaggaggaggcccggaaaatg
aaaaggaaagaagcagccttcaagaacatgctgaaacaggccaccccaccgctggagcca
gaggcttcatgggaggcggtaagagagagattcttaaaagaatctgcttttgaggacgtg
actctggagtcggagaggaaacggatattcaaagatttcatgcacgtcttggagcacgaa
tgccaacatcatcactccaagacgaagaagcactcgaagaaatccaagaagcaccacagg
aaacgctcccgctcccgatcgggttcggagtctgaggatgaagaatatcacaaaaagaaa
aagaggtcacagtccaaatccccctctgaacgctcctccagtggagaatctgagagaagc
tacaaaaaatccaagaagcacaagaagaagggcaagaagaggcgccacaaatctggatca
ccggaatctgaaaacgagaagaaaggacgagagcgcgatgggaagcgcgaaaaagatcta
gagaaagataaagagaatgacaagtcccgagggaaatctcactccgactctaaacagaag
tctcctaaaaggaaagctgccaaagaggagggcggctgggacacgtcaggcagtgagctg
agtgaaggagagctggagaaaagaagaagaactttactagaacagctggatgcaccttga
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