Hippoglossus stenolepis (Pacific halibut): 118120333
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Entry
118120333 CDS
T08308
Symbol
usp9
Name
(RefSeq) probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hsp01002
]
118120333 (usp9)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hsp04121
]
118120333 (usp9)
Enzymes [BR:
hsp01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
118120333 (usp9)
Peptidases and inhibitors [BR:
hsp01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
118120333 (usp9)
Ubiquitin system [BR:
hsp04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
118120333 (usp9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
Vps23_core
Motif
Other DBs
NCBI-GeneID:
118120333
NCBI-ProteinID:
XP_035031046
LinkDB
All DBs
Position
13:19023856..19060474
Genome browser
AA seq
2650 aa
AA seq
DB search
MTATTRGSPVGGNDSQGQGQAPDAQSQPPLPQNQTSSPNSSNENSPVSPPDEQGQEDGPP
QLEEEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLSKKGLDVKCEACQR
FFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLELLAMAA
NPHCKFHIYNGTRPSETVPAGAQLADDELFARPPDPRSPKGWLVDLINKFGTLNGFQMLH
DRFMSGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPVIEMVPQFLENLTDEELKKEA
KNEAKNDALSMIIKSLKNLASRVPGQEETVKNLEIFRLKMILRLLQISSFNGKMNALNEV
NKVISSVSYYTHRHNPEEEEWLTAERMAEWIQQNHILSIVLRDSLHQPQYVEKLEKILRF
VIKEKALTMQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKASWTNA
SKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKILDYS
CSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLRKKMPINIQTNL
VGQTQRSPHVFYRHDLINQLQHNHALVTLVAENLSAYMETMRQFSKEEQAEFDPQTVRPG
SRYSHVQEVQERLNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVFLCDREACFKWYSKLM
GDEPDLDPDINKDFFENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAYMMDD
LELIGLDYLWRVVIQGSDDIASRAIDLLKEIYTNLGPKLQVNQVEIHEDFIQSCFDRLKA
SYDTLCVLDGDKDSINCARQEAIRMVRVLTVLKEYINECDSDYHEERTILPMSRAFRGKH
ITLIVRFPNQGRQVDDLDIWSHTNDTIGSVRRGILTRIKANAAHTKIELFIGGEVVDPAD
DRKLIGQLNLKDKTLITAKLTQVSANMPSSPDSSSDSSTGSPGNHGNHYSDGPNPEVESC
LPGVIMSLHLRYISFLWQVADLGCNLKMPLLRDGARVLMKLMPPDNTTVENLRAVCLDHA
KLGENSLSPSLDSRFFGPSPSQVLYLIEVVYALLMPASATLGEDASDFQYNFLKSGGLPL
VLSMLTRNNFLPAADMETRRGAYLNALKIAKLLLTSVGFGHVKAVAEACQPNAEGNIPVS
PINQATHDQALVLQSALQNIPNPASECMLRNVAIRLAQQISDENFFQASKYIPDICVIRA
VQKIVWASGCGTVQLVFSSNEEISKIYEKTNAAKEPDGEDEQVCCEALEVMTLCFALMPT
ALDTLSKEKAWQTFIIDLLLHCHSKSVRQMAQEQFFLMATRCCMGHRPLLFFITLLFTVL
GSTAKERAKHAGDYFTLLRHLLNYAYNSNINLPNAEVLLNNEIDWLKRIRDEVKRTGETG
VEETILEGHLGVTKELLAFQTPEKKYYIGCEKGGANLIKELIDDFIFPASNVYLQYMKSG
EFPTEQAIPVCSTPASINAGFELLVALAVGCVRNLKQIVDTLTDMYYLGCETLTEWEYLP
PVGPRPNKGFVGLKNAGATCYMNSVIQQLYMIPPIRNGILAIEGTGTDVDDDMSGDEKQE
NESNVDPRDEVFSYHHQFDDKPSSKSEDRKEYNIGVLRHLQVIFGHLAASRLQYYVPRGF
WKQFRLWGEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQGC
PHRYECEESFTTLNVDIRNHQNLLDSMEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIK
KLPPVLAIQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDDVNPENQVI
QQNEPSEPTPPGSSKYRLVGVLVHSGQASGGHYYSYIIQRNGGDGEKNRWYKFDDGDVTE
CKMDDEEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDSLDKDSELVK
YISELTISSTKPNQVKMPGVIECSVRKQNVQFMHNRMQYSLEYFQFIKKLLTCNSVYLNP
PPGQDHLLPEAEEIAMISAQLAARFLFSTGFHTKKVVRGPASDWYDALCILLRHSKNVRY
WFAHNVLFAYPNRFSEYLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPTASPGPSTQQ
GCDNLSLSDHLLRAVLNLLRREVSEHGRHLQQYFNLFVMYANLGLAEKTQLLKLNVPATF
MLVALDEGPGPPIKYQYAELGKLYTVVSQLVRCCDVSSRMQSSINGNPPLPNPYGDTNLT
APVMPVQQLVAEILFVRTSYVKKIIEDCSNSEETVKLLRFSCWENPQFSSTVLSELLWQV
AYSYTYELRPYLDLLLQILLIEDSWQTHRIHNVLKGIPDDRDGLFDTIQRSKNHYQKRAY
QCIKCMVALFTNCSVAYQILQSNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPP
VQSNETSNGYFLERSHSARMTLAKACELCPEELKCTQESPGKEPDEQEAPDDQDSSPPED
TSLYPHSPGTTQFQQNNHPHGQPYTGPAAQHMNNPQRPGPASAPTPGPTQTTTPTPTPTP
GPGPGPSPGPGPSPGPGPGPGSGSGSGPGSGPSPGPGPRAQENWESTEEVTPAPAPAPAS
TTPAPAPPKE
NT seq
7953 nt
NT seq
+upstream
nt +downstream
nt
atgacggccaccactcgtggctctccggtggggggcaatgacagtcagggccagggccag
gcacctgacgctcaaagccaacccccactgccacagaaccagacgtcatctcctaactca
tctaatgagaactctccagtgagcccaccagatgagcagggtcaggaggatgggccccct
cagctggaagaggaggagcctgctttccctcacactgacctagcaaagctggatgacatg
atcaacaggcctcgttgggttgttccagttttgccaaaaggagagttggaagtcctcttg
gaagctgctatagacctgagtaaaaaaggactggatgtgaagtgtgaggcatgtcagagg
tttttccgagatggtctgaccatctctttcacaaagatcctgacagacgaggcagtcagt
ggctggaaatttgagattcataggtgtattatcaataacacacaccgattggtggagttg
tgtgtggccaagctctctcaggactggttccctctactagagcttctggccatggccgcc
aaccctcactgcaagttccacatctataatggcacacggccctctgagacggtccccgct
ggagcacagctggctgacgacgagctctttgcccgaccaccagacccacgatctcccaag
ggatggttggtggacctaataaacaaatttggcacgttaaacgggtttcaaatgttgcac
gatcgcttcatgagcggccaagcactgaacgtccagatcatcgctgcacttatcaagcct
tttggccagtgttatgagttcctcacattgcacacggtaaagaagtacttccttccagtc
atcgagatggttcctcagtttctagagaatctaacagatgaggagctgaagaaagaggca
aagaatgaagccaaaaacgacgcactgtccatgataatcaagtctctgaagaatctggct
tctcgtgtaccggggcaggaggagaccgtgaagaatttagagatttttaggttaaaaatg
attcttaggttattgcaaatttcttcttttaatggcaaaatgaatgcactaaatgaagtt
aacaaggtgatctccagtgtgtcctactacactcatcggcataaccctgaggaggaggag
tggctgactgcagagcgcatggcggagtggatccagcagaaccacatcctgtccattgtg
ctcagggacagtttgcaccagccgcagtatgtcgagaaactggagaagatccttcgcttc
gttatcaaagagaaagctcttacaatgcaggatctggataatatctgggctgcacaggct
ggtaagcatgaggctattgtgaagaatgtccatgacctcctggccaagctggcatgggac
ttctcacctgagcagctcgatcacctctttgactgtttcaaggcaagctggaccaatgcc
agcaagaagcagcgtgaaaagctgctggaacttatccggcgcttggctgaggatgataag
gatggtgtgatggcccacaaggtcctcaacctgctgtggaacctggcacacagcgatgat
gtgcctgtagacatcatggaccaggctcttagtgctcacatcaagatattggattacagt
tgctcacaggacagagacacacagaaaatccaatggatagatcgcttcatagaggaacta
cggaccaacgataagtgggtgatccctgccctgaagcaaatcagagaaatctgtagcctc
tttggtgaagctcctcaaaaccttagaaagaaaatgccaattaacatacaaacgaactta
gtgggtcaaacccagagaagtcctcatgtgttctaccgacatgacctgatcaaccagctg
cagcacaaccacgctctggtgaccctagtggctgagaatctctcagcctacatggagacc
atgaggcagttctccaaagaagagcaagctgagtttgacccccagactgtcaggccagga
agccgctacagccatgtccaggaagtacaggagcggctcaacttcctgaggttcttgcta
aaggatggccagttgtggctatgtgcccctcaggccaagcagatctggaagtgtctggct
gagaatgcagtgttcctttgtgaccgtgaggcctgcttcaaatggtactccaagctgatg
ggtgatgagccagacctggacccggacatcaataaggacttctttgagaacaacgtcctg
cagttggacccgtctctgctgacggagaatggcatgaagtgttttgagaggttcttcaag
gctgtcaactgcagggagggcaagctggtagcaaagcgcagggcctacatgatggatgac
ctggaactaataggcttggactacctctggagggtggtgattcaaggaagcgatgatatc
gctagccgagcaatagacctgctgaaagagatttataccaacctcggaccaaaactacaa
gttaatcaggttgaaattcatgaggatttcattcagtcatgttttgaccgtctgaaggcc
tcctacgacaccctgtgtgtgttggacggagacaaagacagcatcaattgtgcccgtcag
gaagccatccgcatggtgcgagttcttactgtgctcaaagagtacatcaatgagtgcgac
agtgactaccacgaggagaggactatactgcccatgtccagagctttccgtgggaagcat
atcacgttgatcgtgcgttttcccaaccaggggcgtcaggtagatgacctggatatctgg
tcacacaccaatgacacaattggctcagttcgccgtggcatcctgactcggatcaaggca
aacgctgcacataccaagatagagctctttattggaggcgaggtggtcgatccggctgat
gacaggaagttaattggacagctcaacttgaaggacaaaacgttgatcacggccaagctg
acccaggtgagtgccaacatgccttcaagcccagacagctcctctgactcatccactggc
tctcctggtaaccacggcaaccactacagcgatgggcccaaccctgaggtggagagctgt
cttcctggtgtgattatgtcgctgcatctgcgctacatctccttcctgtggcaggtggct
gacctgggctgcaacctcaaaatgcctctgcttagagatggcgctcgagttctcatgaaa
ctcatgccgccagataacacaacagtggagaatctgagagctgtgtgtctggaccacgcc
aaacttggtgagaacagcctcagtccctcactggactcccgcttcttcggcccctccccc
tcacaagtgctctacctcattgaggttgtgtatgctttactgatgccagccagtgccact
ctcggcgaggatgccagtgacttccagtacaacttcttgaagagtggcgggctacccctg
gtgttgagcatgctcaccaggaacaactttctaccagcagcagatatggagacgaggcgt
ggggcgtacctcaacgcgctaaagattgccaagctcctcctgacctctgtgggctttggt
catgtgaaggctgtggctgaggcctgccagcccaatgctgagggaaatattcctgtctct
ccgataaaccaggccactcatgaccaggcgctggtcctccagagtgccctgcagaacatc
cccaaccctgcatcagaatgcatgctgcgcaatgtagccatccgcctggcccagcagatt
tctgatgagaatttcttccaggcatcgaagtacatcccagacatttgtgtgatccgagca
gtacagaaaattgtgtgggcttcaggctgtggtacggtgcagctcgtcttcagctccaat
gaagaaatcagcaaaatatacgagaagacaaatgcagctaaggagccagatggggaagat
gagcaggtgtgctgcgaggccctggaagtgatgacactgtgttttgccctcatgcccacg
gctctggacacactcagtaaggagaaggcttggcagaccttcatcatagacctgctgctg
cactgccacagcaaatctgttcgtcagatggctcaggagcagtttttcctgatggcaact
cggtgttgtatgggccatcgacccctcctctttttcatcaccctcctctttactgtgttg
gggagtacagccaaggagcgagccaaacatgctggggactacttcacgttgctcagacat
ctgctgaactatgcctataacagtaacatcaacctgccaaatgctgaggtgctgctcaac
aatgagattgactggctgaagaggataagggacgaggttaagaggacaggggagactggt
gtggaggagaccatcctggagggccaccttggggtcaccaaagaacttctagccttccag
acaccagagaagaagtattacattggctgtgagaagggaggagcgaacctcattaaggag
ctgattgatgacttcattttcccagcatctaatgtttacctgcagtacatgaaaagcggg
gaattccccaccgagcaagccatcccagtgtgcagcacccctgcttccatcaacgcaggc
tttgagctcctggtagcactggctgtcggctgtgttcgcaacctcaaacagatagtcgac
actctgactgacatgtactacttaggttgtgaaacattgacagagtgggagtacttgcct
ccagtggggccacggccaaacaaaggctttgtaggactgaagaacgctggggccacctgt
tatatgaactctgtcattcagcagctgtacatgatccctcccatccgcaatggcatcctg
gccatcgagggcacaggcactgatgtggacgatgacatgtcaggggatgagaagcaggag
aatgagagtaacgtggatcctcgtgatgaggttttcagctaccaccatcagtttgatgat
aagccctctagtaagtcagaggacaggaaagagtacaacattggggtcctgcgccaccta
caggtcatctttggccatctggctgcgtccagactgcagtattatgtccctaggggattc
tggaaacagttcaggttatggggtgagccagtgaacttgagagagcaacacgatgctctg
gagtttttcaactctttggtggacagtctggatgaagctctgaaagctctgggtcaccct
gccatgctcagcaaggtgctgggagggtcctttgctgaccagaagatctgtcagggatgc
ccccacaggtatgagtgtgaggagtcattcacaacactcaacgtagacatcagaaaccac
cagaacctgctggactctatggagcagtatgtgaaaggagacctgctggagggagccaac
gcctaccactgtgagaagtgtaataagaaggtggacacggtgaaacgcctgctgattaag
aagctgccgccagtcctcgccatccagctgaagcgctttgactacgactgggagcgggag
tgtgccatcaagttcaacgactactttgagttccccagggagctggacatggagccgtac
acggtagcgggtgtggccaagttagagggtgatgatgttaatccagagaaccaggtgatc
caacagaatgagccctctgaacccacgcccccaggcagctccaagtatcgcctggtggga
gtgctggtccactcaggccaggccagcggtggacactactactcctacataatccaaagg
aatgggggtgatggtgagaagaaccgctggtataagtttgacgatggggacgtgactgag
tgtaaaatggacgatgaggaggagatgaagaatcagtgctttggaggagaatacatgggc
gaggtgttcgatcacatgatgaaaaggatgtcttaccggaggcagaagcgatggtggaat
gcctacatcctattctatgagcgtatggactcactggacaaggacagcgagcttgtcaaa
tacatctcagagctgaccatctcctccaccaagccaaatcaggtcaagatgcctggtgtc
atcgagtgcagcgtccgcaagcagaacgtccaattcatgcacaacagaatgcaatacagc
ctggaatatttccagttcattaagaaacttctgacctgtaacagtgtctatttaaaccct
cctccaggacaagaccatcttctgccagaggcagaggagattgctatgataagtgctcag
ctggctgctaggttcctcttcagcacaggtttccacaccaagaaagtagtacggggtcct
gccagtgactggtatgatgccctctgcatcctgctgagacacagtaagaatgtacgctat
tggtttgcacacaacgttctgtttgcttaccctaaccggttctccgagtacctgcttgag
tgcccgagtgctgaggtccgtggagcattcgccaagctcatcgtcttcatcgctcacttc
tccctgcaagatggcccctgtccctcccccaccgcctcgcctggaccctctactcagcag
ggctgtgataacctcagtctaagtgaccacctgttaagagctgtactcaaccttctcaga
agagaggtttctgaacacggccgtcacctgcagcagtacttcaacctctttgtcatgtac
gccaacctgggtttggcagaaaagactcagctgctgaaacttaacgttcctgccactttc
atgttggtcgctctggacgagggtcccggccctcccattaaataccagtatgctgagctg
ggcaagctctacactgtggtttcccagctggtccgctgctgtgatgtctcctcgcgcatg
cagtcctccatcaatggtaaccctcctcttcctaacccgtatggggacaccaacctgact
gccccagtgatgcctgtgcagcagctggtggcagagatcctttttgtgcggaccagctac
gtgaagaagatcattgaagactgcagcaactctgaggagactgtgaagctgcttcgcttc
agctgctgggagaatcctcagttctcctccactgtgctcagtgaactgctctggcaggtg
gcgtactcctacacctatgagctgaggccttacctggacttgctgctacagatcctgctc
atcgaggactcgtggcagacacataggatccacaatgtgctgaagggaattccagatgat
agagatggtctttttgacaccatccagcgctccaagaaccactatcagaagcgggcctac
cagtgcatcaagtgcatggtggccctgttcaccaactgctctgtcgcttatcagatccta
cagagtaatggtgacctgaagcgaaagtggacgtgggcagtcgagtggttaggggacgag
ctggagaggaggccatacacaggcaacccccagtacacctacaacaactggtcccctccg
gttcagagcaacgagacctccaatggatatttcctggagcgttcgcacagtgcacgtatg
acactggccaaggcctgtgaactctgtcctgaagagctcaagtgtactcaggaaagccca
gggaaggagccggatgaacaggaagcacctgatgatcaagactcctccccacccgaggac
acgtctctgtacccacattctcctggaaccacccagtttcagcagaacaaccatcctcat
ggtcagccgtataccggacctgctgctcagcacatgaacaacccccagcgtcctggtcct
gcctctgccccgactcccggcccgacccagaccaccacccccacccccactccaaccccc
ggccccgggcctggccccagccctggccctggccctagcccgggcccaggccctggacct
ggatctggatctggatctggacccggatctggacccagtcctggcccaggcccacgagca
caagagaactgggagagcactgaggaggtcacccctgcccccgctccagcccctgcctcc
actaccccggcacctgccccgcctaaggagtaa
DBGET
integrated database retrieval system
