Hippoglossus stenolepis (Pacific halibut): 118120390
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Entry
118120390 CDS
T08308
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118120390 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118120390 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118120390 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsp04147
]
118120390 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118120390 (col4a2)
Exosome [BR:
hsp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118120390 (col4a2)
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118120390 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118120390
NCBI-ProteinID:
XP_035031141
LinkDB
All DBs
Position
13:15890611..15946994
Genome browser
AA seq
1673 aa
AA seq
DB search
MQGQHTGGLKSLRLLLLCLFCAILVSGAHAGGKKHSGPCGGRDCSGDCKCFPEKGGRGQP
GPVGPQGPHGPTGRPGDHGIQGQKGHKGDGGRGGIIGPKGSVGQTGVPGFSGNDGIPGHP
GQAGPRGRPGADGCNGTKGDSGLSRQPGYNGSPGFPGQSGRKGEKGDSLELSVYMQRFRG
DPGTPGMHGIFGPPGKPGWQGNRGFPGPKGPPGGPGPRGPKGTMTKVFKGIRGDQGDIGL
PGVQGNSTHPHSGPPYGPHYGVKGSPGEKGLKGESGDVDQGETGVMGFTGSRGEPGADGR
PGPRGDSGDAGPRGRDGYKGVRGEPGELITSGSSWSPAAGPPGPFGERGPHGERGPVGDQ
GFPGPTGRPASDTQQQVWDFFGPFGIKGEQGEKGPEGGPGSPAVSVGPPGAKGRPGSMGS
RGRTQTWDEVFKGAPGGRGRPGNAGYKGVKGDHGECECSVVNSPSGPPGPVGNPGDPGMT
GEFGQEGDSGDPGPQGNDGSTGSSGFNGEPGPKGQKGKASVATQKGYPGDLGDPGRDGEP
GAQGVPGLNGLPGFPGSQGPPGEGPWGERGDKGFLGLPGQPGVAGQRGEPGAVLGALKGQ
RGLPGDDGLAGYHGVPGTTGSPGGCSPTGAGGQVDVTGPCNTLPGPPGQPGLPGPTGLPG
FQGLQGQKGPRGILGVHGEKGETGEQGVGGRPGPPGFAGPRGEVGFPGSIGSLGVPGSSG
MPGRHGAQGEKGFHGEIIGASPGGSGDSGLIGLQGNKGQTGNQGDPGYPGMGGMPGMIGF
KGESGPRGLQGEQGRPGPAGKYGYPGDPGQAGQPGPHGTTGQPGFTGERGSEGESGPPGP
IGLKGMPGGYGDDGVLGEYGSSGNPGEPGADGRPGAPGMKGYKGSSGMSGFEGSRGYPGG
KGFGGLQGEPGVPGQVGLKGVTGQSGLKGERGVSGQSGEKPQIPAKMIVDMKGVKGERGH
RGNQGFIGPRGSKGFHGLPGSGGTHGLPGDPSNDKGYYGDPGAQGLPGIKGMPGPTGNRG
ISGFQGMSGNRGIKGSPGAYGATGDKGRKGVRGDKGLHIDLPGPTGLRGEDGFQGVLGQT
GLIGYTGDRGVTGFDGIEGKKGYSGVPGISGQGGSDGQRGTPGNQGQKGFPGIPGEDGRP
GFPGFPGNKGFIGLKGLYGLHGLKGQKGIPGTPGLDIVGPAGEPGVKGGKGESGDPNSQL
GFPGTVGLKGFQGTLGDQGHPGPPGFRGPTGPDGTPDRPGESGDPGFIGREGLPGFPGPR
GFPGVDAPPGEKGISGSNGYPGVNGVKGSKGYQGSVGFRGPSGVSGKKGVKGGQGMMGVP
GHTGVKGERGPVGPKGNTGEPGYRGYPGSQGPAPLPERVPGERGPAGPQGFHGPVGVRGD
IGPQGPPGDAGFMGPIGQKGMPGISGTPGTSGFRGEVGRMGHPGLQGMEGRRGSPGISGL
PGMAGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWNGYSLLYLEGQEKAHNQDLGLAGSCL
PRFSTMPFLYCNPGDLCYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVCEAPSV
AIAVHSQDITIPQCPAGWRSLWIGYSYLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIEC
NGAKGTCHYFANKQSFWLTSIDQSFHANPASETLKAGQLLSRISRCQVCMKNL
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atgcagggccaacacaccggaggactgaagagcctgaggctgctgcttctgtgcctcttc
tgcgccatccttgtctcaggagcgcacgcgggtgggaagaagcacagcggcccctgcgga
ggaagagactgcagcggagattgtaaatgtttcccagagaagggtggcaggggtcaacct
gggcctgttggtccccagggtccacacgggcctacgggaagaccaggtgatcacggcatc
caaggacaaaagggccacaaaggcgacggtggccgtggtggcatcataggtcctaaagga
agcgtgggacaaaccggcgttcctgggttttcaggaaacgatggcatacctggacaccca
ggacaagctgggcccagagggaggccaggtgctgacggttgtaacgggacaaagggagac
tcaggtttatcgcgacaacctggttataatggctcacctggttttcctggacaatccggc
aggaagggagagaagggagactctctggagctgagtgtgtacatgcagcgtttcagggga
gatcccggcacaccagggatgcacggaatatttgggcctccaggaaagccaggatggcag
ggtaacagaggcttcccaggaccaaagggtcccccagggggtccaggtccacgaggacca
aagggcaccatgaccaaagtgtttaaaggaatcagaggagaccaaggggacattggactt
ccaggcgtgcaaggaaactccactcatcctcattctgggcccccctacggaccccactat
ggagtcaagggaagtcctggagaaaaaggtctgaaaggagaaagcggagatgtggaccaa
ggagaaactggtgtaatgggattcactggatcacggggtgaacctggcgcagatggcaga
cctggaccaaggggggattctggtgacgcaggaccaagaggcagagatggatataaggga
gtcagaggtgaaccaggagagctgatcacatctggatcctcatggtctccagcagctgga
cctccgggtccctttggtgagcggggtccacatggagagaggggcccagtaggagatcaa
ggcttccccggacccacaggacgtcctgcctctgacacacagcaacaagtgtgggacttt
ttcgggccatttggcataaagggggaacaaggagagaagggcccagaagggggaccaggg
agccctgcagtcagtgtaggacccccaggggccaaggggcgcccagggtccatgggctct
cgaggacgcacacaaacatgggatgaggtctttaagggggctccaggcgggagaggaagg
cccggcaacgcaggctataaaggagtgaaaggtgaccatggagaatgtgagtgcagtgtt
gtaaactctccatcgggaccacctggccctgttgggaatccaggtgatcctgggatgacg
ggagagttcggtcaggagggtgattcaggagacccaggtccccagggcaatgatgggtcc
actggctcttctgggttcaatggggaaccggggccaaaaggccaaaaaggaaaagcaagt
gtggccacacagaaaggatatcctggagatctgggggatcctggaagagacggtgagccg
ggagcacaaggtgttccaggcctaaacggtttacctggtttccctggtagccaaggtcct
ccgggagaaggtccctggggagaacgtggagacaaaggtttcctaggtctacctggtcaa
cccggtgtagccgggcagaggggagagccaggtgccgtccttggggccctcaaaggccag
cgtggtttacctggtgatgacggtcttgcaggctatcatggagttcctggaacaactggc
agtccaggcggctgtagtccgacaggagctggaggacaggtggatgtaacaggtccttgt
aatacacttccaggacctcctgggcagcctggacttccaggacccactggattaccaggt
ttccaaggtctacaaggccaaaaaggaccacggggtatacttggagttcacggagagaaa
ggagaaacaggagagcaaggcgtgggtggccgtcctggaccaccaggttttgccggccca
cgtggtgaagtgggatttcctggcagcataggttcacttggtgtccctggttcatccggt
atgcccgggcgacacggggcacaaggtgagaagggttttcatggagagatcatcggggct
tcacctggaggcagcggtgattctgggctgattgggcttcaaggaaataagggccagact
gggaatcaaggagatcccggatatccaggaatgggtggcatgcctggaatgattggcttc
aaaggagagagtggacctagaggactgcagggggagcaagggaggcctgggcctgctggc
aagtatggctacccaggtgatcctgggcaagcaggtcaacctgggcctcatggtactact
ggacagccaggtttcactggagagaggggaagtgaaggagaatcaggccctccaggtccc
atcggattaaaaggaatgcctggggggtacggtgatgacggtgtccttggagagtatggc
tcatctggtaatcctggagagccaggtgcagatggacgcccaggagccccaggaatgaag
ggatataaaggatcttccggcatgtcaggcttcgaggggagcaggggttatcccgggggg
aagggcttcggggggctgcaaggagaacctggagtgccaggccaagtcggcctaaaagga
gtgacaggtcaaagtggactgaagggtgaacgtggtgtgagtggtcaatcaggggagaag
cctcagatccctgccaagatgattgttgacatgaagggtgtcaagggagagcgcggacat
cgaggaaatcaaggtttcatcgggccaagaggttctaagggttttcacggtttgcctggc
agcgggggaactcatggtttacctggagatcccagcaatgacaaaggatactacggagat
ccaggtgcacaggggctccctgggatcaagggaatgccaggcccgactggcaatcgagga
atttcaggttttcaaggaatgtcgggaaacaggggaattaaaggaagtcccggtgcctat
ggtgcaacaggagacaaaggcaggaagggggtcagaggtgataaaggtcttcatatagac
cttccaggacccaccggactgagaggagaggacggcttccaaggagttctcggccaaaca
ggactgattggatacactggggacaggggtgttactggttttgatggtattgaagggaaa
aagggctattcaggtgttccaggaatatcaggacaaggaggctcagacgggcagagggga
actcctggtaaccagggtcaaaaaggctttcctggaattcctggagaagatggccgcccg
ggttttcctgggtttccaggcaacaaaggtttcattggcctgaagggcctgtatggatta
catggactgaaaggacagaagggtatcccaggaacaccaggtctggatatcgttggacca
gctggcgagcccggagtcaaaggaggaaagggagagagcggtgaccccaacagccagctg
ggctttccaggaactgtgggtttgaaaggcttccagggaactctaggggaccagggtcat
ccagggccaccaggattccggggccccactggaccagatgggaccccagacaggccagga
gagagtggggaccctggttttataggacgtgaaggattaccaggtttccctggaccaaga
ggatttcccggcgtggacgctccccctggagaaaagggcatatcaggaagtaatgggtat
cctggagttaatggtgtaaaaggatccaaaggatatcaaggttcagttggattcaggggg
cctagtggtgtttctgggaagaaaggtgtgaaaggggggcaagggatgatgggagttcct
ggtcatactggagtgaagggagaaagaggaccagttggtccaaaaggaaacactggggaa
ccaggttaccgtgggtacccaggaagccagggtcctgctccacttcccgaaagagtcccg
ggagagaggggccctgcaggaccacagggtttccatggaccggtgggggtgagaggggat
atagggccacagggtcctcctggtgatgcaggtttcatgggacccattgggcagaagggc
atgcccgggatcagtggaacaccaggaacatctggattccgtggagaggtcggaagaatg
ggccaccccggtctgcaaggcatggaaggtcgccgtggcagccctgggatctccgggtta
cctggcatggcgggccgcagtgtcagtgtcggctacttactggtgaagcacagtcagtca
gaacagacgcccatgtgtccagtgggtatgtccaaactgtggaacggctacagtctgctg
tacctcgagggccaggaaaaagcccacaaccaggacctcggtttggccggctcctgcctc
ccccgcttcagcaccatgcctttcctctactgcaatcctggagacctgtgttactacgcc
agcagaaatgataaatcctactggctgtcgacaacggctcctcttcccatgatgcccgtg
gaagagggagaaattaaaccctacatcagccgctgctcggtatgtgaagctccgtcagtt
gccatcgcagtccacagccaggacatcaccatcccacagtgtccggccggctggcgcagc
ctgtggatcggttactcctacctcatgcacacagcagcaggaaacgagggcggaggtcag
tccctgtcatcgcccggctcctgcctggaggacttccgcacgacaccgttcatcgagtgt
aacggagccaaagggacgtgccactacttcgctaacaagcagagcttctggctaacctcc
atcgatcagtcgttccacgctaacccagcatcagagactctgaaagcaggccagctcctg
tcacgcatcagccgctgccaggtctgcatgaagaacttgtga
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