Hippoglossus stenolepis (Pacific halibut): 118120890
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Entry
118120890 CDS
T08308
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 isoform X1
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118120890 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118120890 (smarca5)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118120890 (smarca5)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
118120890 (smarca5)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
118120890 (smarca5)
RSF complex
118120890 (smarca5)
WICH complex
118120890 (smarca5)
B-WICH complex
118120890 (smarca5)
NORC complex
118120890 (smarca5)
BRF complex
118120890 (smarca5)
NuRF complex (fruit fly)
118120890 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
DBINO
Myb_DNA-binding
AAA_14
Motif
Other DBs
NCBI-GeneID:
118120890
NCBI-ProteinID:
XP_035032230
LinkDB
All DBs
Position
2:21316862..21325339
Genome browser
AA seq
1039 aa
AA seq
DB search
MSESENCVLPREELPEVVEARGAEVKTDKSDSSDAGKESSSDAGPDGADASSSSAIAPGY
EEKVQTDRTNRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSAGE
LSLIDSNRHRRTEQEEDEELLNESTKTTNVCARFDDSPSYVKAGKMRDYQVRGLNWLISL
YENGINGILADEMGLGKTLQTIALLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPS
LRAVCLIGDREQRTALIRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIK
NEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTNNC
LGDTKLVERLHTVLRPFLLRRIKADVEKTLLPKKEIKMYVGLSKMQREWYTKILMKDIDI
LNSAGKMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLAVNSGKMVVLEKLLPK
MKQQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQISINTFNEPGSAKFI
FMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQQKQVRVFRFITENTVE
ERIVERAEMKLRLDSIVIQQGRLVDPNANKLGKDEMLSIIRHGATHVFASKESEITDDDI
DAILERGERKTMELKEKMSSLGESTLRNFTMDTENSSVYTFEGEDYREKKKVITNWIEPP
KRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRK
TIGYKVPRNLEMPNSAQAQKEEQAKIDEAEALTEEELEEKENLLQQGFTIWNKRDFNQFI
KANEKWGRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRR
ISIKKALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELR
QCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPKGASAQ
KRKSEGTPDGRGRRKKLKL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaagcgaaaactgcgtgctgccgcgggaagagctccctgaagttgtagaagcc
agaggagcggaggtaaagacggataagtctgactcttcagatgctggaaaagagtcctcc
tcagatgccggtcccgatggagcagatgcatcatcttcctcagctattgctccaggttac
gaggagaaagtgcaaacagaccggaccaacagatttgagtacctgttgaagcaaacagag
ttgtttgctcatttcatccaaccagctgcacagaagacccctacctctccactgaagatg
aaaccaggacgtcctcgcataaaaaaagatgaaaaacaaaacctgctgtctgctggagaa
ttgtctttgattgacagcaaccggcaccggcggacggagcaggaggaggatgaagagctt
ctgaacgaaagcaccaagacgaccaatgtctgcgctcgttttgacgattctccctcttat
gtcaaagctggaaaaatgagggactatcaggtccgtggcttgaactggctcatctctttg
tatgaaaatggcatcaatggcatcctcgctgatgaaatgggtttgggtaaaactctccag
actatcgccctgctgggttacatgaagcactacagaaacatcccgggtccccacatggtg
ctggtgcccaagtccaccttatacaactggatgaacgagttcaaacgatgggttccctct
cttcgtgcagtctgcctgattggagacagagaacagaggactgctttgatcagagatgtg
ctgctgccaggagagtgggatgtgtgtgtcacatcctacgagatgctcatcattgaaaag
gctgtgttcaagaagttcaactggaggtacctcgtaatcgacgaagcccacaggatcaag
aatgagaaatcaaagctatcagaaattgtacgagaattcaagaccaccaatcgtttactg
ctgactggaacaccccttcaaaacaacctccacgagctgtgggctctgctcaacttcctg
ctgcctgacgtctttaactcagcagatgactttgactcctggtttgacacaaacaattgc
ttgggtgacacgaagttggtggaacgtcttcacactgttctacgtcctttcttgctccgt
cgtattaaagctgacgtggagaaaactttgctcccaaaaaaagagatcaagatgtacgtg
ggcctgagcaagatgcagcgagagtggtacacaaagattctgatgaaggacattgacatt
ctgaactcagcgggtaagatggacaagatgcgcctgctgaacgttctcatgcagctcaga
aaatgttgcaaccacccgtacctgttcgacggagctgagccaggtcctccgtacacaact
gacctgcatctggccgtgaacagtggcaagatggtggtgctggagaagctgctacccaaa
atgaagcagcagggttcccgtgtgctcatcttcagtcagatgaccagggtgctggacatc
ttggaggactactgcatgtggaggaactatgggtactgccgcttggatggtcagacgccg
cacgaggaaagacagatctctatcaacacattcaatgagcccggcagcgctaagttcatc
ttcatgttgagcaccagggccggtgggctggggatcaacctggctacagccgacgtcgtc
atcctctacgactcggactggaaccctcaagtcgacctgcaggccatggaccgagctcac
aggattggtcagcagaagcaggtacgcgtctttcgtttcatcaccgaaaacacagtggag
gagaggatcgtagagagggccgagatgaaactgcgcctggactccattgtcatccagcaa
ggaagactcgtggatccaaacgcaaacaagctgggcaaggatgagatgctgtccatcatc
cgtcacggtgccacacacgtgttcgcttccaaagagagtgagatcacagatgatgacatt
gatgcaatcctggagagaggtgaaagaaagactatggagttgaaggagaagatgtcgtct
ctgggtgagagtaccctgagaaacttcaccatggacacagagaacagcagcgtgtacaca
tttgaaggagaggactatagagagaagaaaaaggtcattaccaactggatcgagccgccc
aagagagagaggaaagccaattacgctgtggatgcctactttagagaagccctgcgtgtc
agtgaacccaaagcacccaaggctcctcgtcctcccaagcagccaaatgtccaggacttc
cagttcttcccccctcgtctctttgagcttcttgaaaaggaaattctcttctataggaag
accataggctacaaggttccccgtaacctggaaatgccaaactctgctcaggcgcagaaa
gaggagcaggctaagattgacgaggccgaggctctcacagaggaggagctggaggagaag
gagaacctgctgcaacagggatttactatttggaacaaacgtgacttcaaccagtttatc
aaagccaacgagaagtggggaagagatgatatcgagaacatcgccagagaagtggagggg
aaaacccccgaagaagtcatggaatattctgctgttttctgggagcgctgcaatgagctg
caggacatcgagaagatcatggcccagatcgagagaggagaggccaggattcagagaagg
attagcatcaagaaagcacttgactcaaagattggtcgctacaaggctcccttccatcag
ctccgtatttcctacggcaccaacaaaggcaagaactacacggaggaagaagaccgcttc
ctcatctgtatgctccacaagctgggcttcgacaaggagagtgtgtacgatgagctgcgt
cagtgcatccgtaactcacctcagttccgcttcgactggttcctcaagtccaggaccgcc
atggagcttcagagacgatgcaacaccctaattacgctgatagagagagagaacatggag
ctggaggagagggagaaggcggagaagaagaaacgaggtccaaagggtgcatcagctcag
aaacgaaagtcagagggaacccccgacggtcgcggacgcaggaagaagctcaagttgtga
DBGET
integrated database retrieval system
