Hippoglossus stenolepis (Pacific halibut): 118120966
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Entry
118120966 CDS
T08308
Symbol
ptbp1b
Name
(RefSeq) polypyrimidine tract-binding protein 1b isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118120966 (ptbp1b)
03041 Spliceosome [BR:
hsp03041
]
118120966 (ptbp1b)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
118120966 (ptbp1b)
Spliceosome [BR:
hsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
118120966 (ptbp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
118120966
NCBI-ProteinID:
XP_035032410
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All DBs
Position
14:488661..503003
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AA seq
604 aa
AA seq
DB search
MQLLTGTPHIFYPPSNQGAAPAGRHFVCRSGARGWKLLLASSVLCNGRVSSHDFRVTQQR
AIVPSRSGDGVHHDLTVGTKRGSDDLFPSVSIGPYIMSTTANGNDSKKFKGDIRGPGVPS
RVIHIRKLPNDITEAEVISLGLPFGDVSNLLMLKAKNQAFLEMSSEDAAQNMVGYYSTVM
PIIRHHPVYVQFSNHKELKTDNSPNQERAQAALRALTMSHVDMAVVAPSTVLRVVVENLV
YPVTLDALCQIFSKFGNVLRIIVFTKNSQFQALLQYPDGASAQAAKLSLDGQNIYNGCCT
LRISFSKLTSLNVKYNNEKSRDFTRPDLPAGDSHPALEHPAMATAFTPGIFSAAPYAGAT
HTFPPAFTIQPTMSSPYTGLTVPALPGALASLSLPGATRLGFPPMSPGHCVLLVSNLNPE
RVTPHCLFILFGVYGDVMRVKILFNKKENALVQMSDCTQAQLAMSHLSGQRLHGKPLRIT
LSKHTNVQLPREGHEDQGLTKEYSSSPLHRFKKPGSKNYSNIFPPSATLHLSNIPPAVVE
DDLKVLFSSSGSMVNGFKFFQKDHKMALIQMGSVEEAIESLIEFHNHDLGENHHLRVSFS
KSSI
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcctgacgggaacgcctcatattttttacccaccgtccaatcagggagcggct
ccagccggacgccattttgtgtgccgtagtggagcccgaggctggaagctgctgctcgct
agttccgtgttgtgcaatggacgggtgagttctcatgacttcagggtaacgcagcagcgg
gccatcgttccgagcagaagcggagacggtgtccaccacgatttaacagttggtaccaag
agaggatctgacgaccttttccccagcgtctccattggtccatatatcatgagcaccaca
gccaatggcaacgacagcaagaagtttaaaggtgacataagagggcctggcgtcccgtcc
agggtcatccacatccgcaagctccccaacgacatcactgaggctgaggtcatcagcctg
ggtctgcccttcggagacgtctccaacctgctaatgctcaaagccaagaatcaggccttc
ttagagatgtcctcggaggacgcagctcagaacatggtgggttattactccacagtgatg
ccgatcatcagacaccacccggtctacgtccagttctccaaccacaaggagctgaagacg
gacaactcacccaaccaggagagggcccaggcggctcttcgggccctcactatgtctcat
gtggacatggcggtggtggcacccagcacggtgctgagggtggtggtggaaaacctggtc
taccccgtcacactggacgccctctgccagatcttctctaagttcggcaacgtgttgagg
atcatcgtcttcaccaagaacagtcagttccaggctctgctgcagtatcctgatggagcg
tctgcccaggcagctaaactgtctctggacggacagaacatctataacggctgctgcact
ctgaggatcagcttctctaaactcaccagcctcaacgtcaagtacaacaatgagaagagt
cgagacttcaccagacctgaccttccagctggagatagccatcccgcgctggagcacccg
gccatggccacagccttcactccaggcatcttttcagctgcaccttacgccggagcgact
cacactttccctccggccttcaccatccagcctacaatgtcctccccctacacaggcctg
acggtccccgctctgcccggagcactggcctctctgtccctgccgggggccaccaggctg
ggattcccccccatgtctcctggacactgtgtcctgttggtcagcaacctgaaccctgag
agagttacgccccactgcctctttattctctttggtgtttatggcgacgtgatgagagta
aagatcctgttcaacaagaaggaaaacgctctggttcagatgtctgactgcacacaggct
cagctagctatgagtcacctgagtggccagcggctgcatgggaagcccctgcgcatcacg
ctgtccaaacacaccaacgtccagcttccccgtgaaggacacgaggaccagggcctgacc
aaagagtacagcagttcccctcttcaccgcttcaagaaacccggctccaagaactactcc
aacatcttcccaccttctgccaccctgcacctctccaacatcccccctgctgtagtagaa
gatgacctcaaggtgctgttttccagctcaggatcaatggtcaacggcttcaagttcttc
cagaaggaccataagatggctctgatccagatgggctccgtggaggaagccatcgagtcg
ctcatcgagttccacaaccacgaccttggagaaaaccaccaccttcgagtctccttctcc
aagtcctccatctga
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