Hippoglossus stenolepis (Pacific halibut): 118121006
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Entry
118121006 CDS
T08308
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04010
MAPK signaling pathway
hsp04020
Calcium signaling pathway
hsp04144
Endocytosis
hsp04510
Focal adhesion
hsp04540
Gap junction
hsp04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118121006 (pdgfra)
04020 Calcium signaling pathway
118121006 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
118121006 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
118121006 (pdgfra)
04540 Gap junction
118121006 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
118121006 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
hsp01001
]
118121006 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
hsp04090
]
118121006 (pdgfra)
Enzymes [BR:
hsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
118121006 (pdgfra)
Protein kinases [BR:
hsp01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
118121006 (pdgfra)
CD molecules [BR:
hsp04090
]
Proteins
118121006 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
C2-set_2
Motif
Other DBs
NCBI-GeneID:
118121006
NCBI-ProteinID:
XP_035032487
LinkDB
All DBs
Position
14:complement(21225065..21243854)
Genome browser
AA seq
1473 aa
AA seq
DB search
MIMDGVKAYVVCWGILVLLVAVTCGLSPPTIVSNEEEFVLHPNSVFNISCTGKRNVVWAE
PLPTNTFVYPGYYTATLFIYNATVENTGYYICVYESHEGEVESEPDEDNEAGIYVFVPDL
QAPFVPETPEKVEVPMDPTGVPISCRVSDPYTDVILRSVPTGEEMLAYYDNKMGFFGNLS
PGQYQCETTVNGQTARSVVYTVRVEAPADMEDFTVEVKASEESVRAGQPFNITCIAPAGL
GFQQQWLHPKKQAVGAVQMKQTSPDQVIYILSIPQATAQDSGSYECSITHENSGEVRASS
VAVTVFEDNSFVALDHSGILVTEFVSLLEETEFTILINAYPSPKVMWLKDSKELPVNYYV
LTKTSHNEGNRYQSILTLRQPLEKDNGNYTITVLSGSRTAKFSFNLKVKAPTAMMFPPSS
APVLLPQIDEMVVPLHTPFTLTCRGEAKLAWETPLNVLGLSQEDNSGLFVSTITVDGATA
VHTGYYTCFYSRNTTEDMDDSSIYIYVPDPDVPFVPSPVPFGNHVLSDHEEMEIQCRVSD
PTANVTLVNVDTQQPVSSVYDSKRGALGVFTAGTYVCKALINGEEHYSGEYIVHGWTGGA
ELHVELTAKRTALLVGETIAVTCLARGSEILEDHWKYPGKLTNRASKTVHENKRDQEILY
TLTIPQATTKDSGIYSCSITDIISNESQTKQLAIRVFGSEFLSIRPQFGEYESAELDEVR
EFRAEINSFPTAHVTWHKDGVPLSDVTAEISTSLRQLSETSYMSVLTLIRAKEEDSGNYT
IRVENGNQSRDVSLILEVKVPAVIVELMDIHHGSATGQSVVCITRGQPTPVVEWFICKNI
KHCANDSSSWVPLSTNSTKITVESRMDEDNNLESQVMFGHLENTLAVRCLAKNEMAAVSR
EVKLVSNGPHPELTVAAAVLVLLVIVIISLIVLVIIWKQKPRYEIRWRVIESVSPDGHEY
IYVDPMQLPYDSRWEFPRDRLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPT
ARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRES
FMALNPEKSKKEMDIFGINPADESSRSYVILSFESKADYMDMKQGDNTQYVPMLEMGMTP
KYSDIQSSNYDQPPSQKDSSEGDMDDLLSDDMNEGLTTTDLLSFTYQVAKGMEFLSSKNC
VHRDLAARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNLYTS
LSDVWSYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMSKPEHAPHDVYEMMMKCWN
SEPEKRPTFLGLSDSVASLLPCSYKRHYERVNQEFLKSDHPAVTRVCVENDDAYIGITYK
NQGKLKDRESGFDEQRLSSDSGYIIPLPDLDPISDDEYGKRNRHSSQTSEESAIETGSSS
STFNKREGETLEDITLLDEMCLDCSDLVEDSFL
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggacggggtaaaggcgtatgtcgtctgttggggtattttggtgcttcttgtt
gcagtcacctgtggactgtcaccacccaccattgtgtccaatgaggaggagttcgtcctg
caccccaactctgtgttcaacatcagctgcacaggcaaaagaaacgttgtctgggccgaa
cccctgccgacaaacacttttgtttatccaggatactacactgccacgctcttcatttac
aacgccacagtagaaaacaccggctactacatctgtgtgtatgaaagccatgagggtgaa
gtggagagtgagccagacgaagacaacgaggcaggaatatatgtctttgtgccagatctc
caggccccatttgttccagagaccccagaaaaagtggaagtccccatggacccgacagga
gtccccatctcctgccgcgtgtctgacccgtacacagacgtcatcctcaggagcgtcccc
actggagaggagatgctcgcctactacgacaacaagatgggcttcttcgggaacctctct
cctgggcagtaccagtgtgaaaccacggtgaacggccagacagccagaagtgtagtttac
actgtgagagttgaagcccctgcagacatggaggatttcacagtggaagtaaaagccagc
gaggagagcgtgagggccgggcagcctttcaacatcacctgcatcgctcccgctgggctg
ggctttcagcagcagtggctccatcccaaaaaacaggctgtgggcgcagttcagatgaaa
cagacgtcacctgaccaggtcatctacatcctcagtatcccacaagccactgctcaggac
agcggcagctacgagtgctccatcactcacgaaaacagcggggaggtcagggcgagcagc
gtggccgtcactgtcttcgaggacaattctttcgtggctctggaccacagcggaattctg
gtgacggagttcgtcagcctcttggaggagacagagtttactattctcatcaatgcctac
ccttcccccaaagtgatgtggctgaaagacagcaaagaattaccagtgaactactatgtc
ctcaccaagacaagccacaacgaagggaatcggtatcaaagcattctgacattacgacag
cctctggagaaagacaacggcaactataccatcacagtgctgagtggctctcgcactgca
aagttctcctttaacctcaaagtgaaagctcccactgcgatgatgttccctccgtcctcc
gcccctgtgctgctgccacagatagatgagatggtggtgcccctccacactcctttcacc
ttgacctgccgcggagaggcaaagctggcctgggagacgccactcaatgtgctggggctg
tcgcaggaggacaacagcggcctgtttgtctccaccatcactgtggatggtgccaccgca
gtgcacactggctactacacgtgcttctacagcagaaacaccactgaggacatggatgac
agcagcatctatatctatgtcccagatccagacgttccctttgtgccatcaccggtgccc
tttggtaaccacgtcctgtccgaccacgaggagatggagatccagtgccgagtgtctgat
cccactgctaacgtgaccctggttaatgttgacacccagcagcctgtgtctagtgtttat
gacagcaagaggggcgctttgggggtattcactgctggaacctacgtttgtaaggccctc
ataaacggagaggaacactacagcggggaatacatcgtccacggctggacaggtggtgcc
gagctacatgtcgagctaacagccaagcggactgctctgctggtgggagaaaccatcgca
gtcacctgtctggcccggggatctgagattctggaagaccactggaaataccctggcaaa
ctgactaatcgtgcttcaaaaaccgtgcatgaaaacaagagggatcaggagatcctttac
accctgacgatcccgcaggctacgaccaaagacagcggcatctattcttgctccatcact
gatattattagtaatgagagccagacaaagcaactcgctataagagtttttggaagtgag
tttttgtccatcaggccacagtttggagaatatgagtcagcagagttggatgaggtccgg
gagttcagggccgaaatcaactccttccccactgctcacgtcacgtggcacaaagatgga
gtcccgctcagcgacgtgacggcggagatctccaccagcctgcggcagctcagcgagacc
agctacatgagcgttctcaccctgatccgcgccaaagaggaggacagcgggaactacacg
atccgagtggagaatggaaaccaaagtcgggacgttagcttgatcctggaggtcaaagtg
cctgcagtcattgtggagctgatggacatccaccacggctcagccacaggccagtctgtg
gtgtgtattacacgagggcagcccactcctgtggtggagtggttcatctgcaagaacatc
aaacattgtgccaatgactcgtcctcctgggtgccgctctccaccaactccaccaagatc
acggtggagtcccgaatggacgaggacaacaacctggagagccaggtcatgtttggtcac
ctggagaacacgctggcggtgcgctgcctggccaagaacgaaatggctgccgtcagcagg
gaggtcaaactggtgtccaacggccctcaccctgagctgactgtagctgctgctgtgctg
gtgctcctggtcattgtcatcatctcactcattgtcttggtcattatttggaaacagaaa
cctcgatatgagatccgttggagggtcatagagtctgtgagcccagatggccacgagtac
atctacgtggatcccatgcagcttccctacgactccagatgggagttcccccgcgacaga
ctcgtgctcggtcgtatcctgggttctggagcctttgggaaggtagtggagggcaccgcc
tacggactgagccgctcccaacccgtcatgaaggtggcagtgaaaatgctgaaacccact
gcacgctccagtgagaaacaagccctgatgtctgaactgaagattatgactcatctcggt
cctcatctcaacattgttaacctcctgggagcatgcaccaagtcaggccccatctacatc
atcacagagtactgcttctacggggacctggtcaactacctgcacaagaacagagagagc
ttcatggccctgaacccggagaaaagtaaaaaagagatggacatcttcgggatcaaccct
gcagatgagagcagcaggagttatgtgatcctgtcctttgagagcaaagcagactacatg
gacatgaagcaaggggataacactcagtacgtgcccatgctggagatgggcatgaccccc
aaatactccgacatccagtcatccaactacgaccaaccaccctcgcagaaagactcgagt
gagggtgacatggacgacctgttgtcggacgacatgaacgagggcctcaccaccaccgac
ctgctcagcttcacctaccaggtggccaaaggcatggagttcctgtcctccaaaaattgt
gtgcatcgagacctcgcagccaggaatgtcctcctctctcagggcaagatcgtgaagatc
tgtgacttcggactggccagagacatcatgcatgacaacaactatgtctccaaaggcagc
acttttctgcccgtgaagtggatggcaccagagagtatttttgacaacctctacacgtcc
ctcagcgatgtttggtcctacggcatcctcctctgggagatattctccttaggtggcacc
ccttacccggggatggtcgtggattccagcttctacaacaagatcaagagtggatacagg
atgtccaagcctgaacatgcgcctcatgacgtgtatgaaatgatgatgaagtgctggaac
agcgagccagagaagaggcctactttcctgggtctgagtgacagtgtagcgtctttgctg
ccctgcagctacaagcggcattatgagagggtaaaccaggagttcctgaagagtgaccac
cccgccgtgactcgggtgtgtgttgagaacgacgacgcctacatcggcatcacctacaag
aaccagggcaagctgaaggaccgggagagtggcttcgacgagcagcggctgagctccgac
agcggctacattattcctctccccgacctggaccctatatctgatgatgaatatggaaag
aggaacagacacagctctcagacatccgaggagagcgccattgagaccggctccagcagc
tccacttttaataagcgggagggcgagaccctggaggacatcacgctgctggacgagatg
tgtctggactgtagtgacctggtagaggacagctttctgtga
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