Hippoglossus stenolepis (Pacific halibut): 118121294
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Entry
118121294 CDS
T08308
Symbol
prpf38a
Name
(RefSeq) pre-mRNA-splicing factor 38A isoform X1
KO
K12849
pre-mRNA-splicing factor 38A
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118121294 (prpf38a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsp03041
]
118121294 (prpf38a)
Spliceosome [BR:
hsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
118121294 (prpf38a)
Complex C
U4/U6.U5 tri-SnRNP related factors
118121294 (prpf38a)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
118121294
NCBI-ProteinID:
XP_035032958
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All DBs
Position
14:1085749..1089753
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AA seq
309 aa
AA seq
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MANRTVKDANSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV
YGGNIKPTPFLCLALKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTAADCYKYL
EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHAERMCDIILPRLQRRQVLEEAEMLDPR
ISALEEDLDEVETSDEEDEEEDKQQERLQTPEPHRRSYRDNDRPRRSPSPRYRRSRSPRR
RSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRHRSKSPGHHRSHRHRSHSKSPERSSKK
SHKKSRRNE
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccgaaccgtgaaggatgccaacagcatccacgggacgaacccacagtacctg
gtggagaaaatcatccgaacccgaatctacgagtccaaatactggaaggaggaatgcttc
ggcctcaccgccgagctggttgttgacaaagccatggagctgaagttcgttggaggagtt
tatggcggaaacatcaagcccacccccttcctttgcctcgcgctgaagatgctgcagatt
cagccggagaaagacatcatcgtcgagttcataaaaaatgaggatttcaaatatgttcgt
ctccttggagccatgtacatgagactgacgggcactgcagcggattgttacaaatacctg
gagcctttgtacaacgactacagaaagatcaagagtcagaacagaaacggagagtttgag
ttgatgcacgttgacgagtttatcgacgagcttcttcacgcagagaggatgtgtgacatc
atcctgccccggcttcagaggagacaagtcctcgaggaggcggagatgttggacccgcgc
atcagcgctctggaggaagacctggatgaagtggagaccagtgacgaggaagatgaggaa
gaagacaagcagcaggagagactccagacccctgaaccacacagacgtagttaccgtgac
aacgacaggcctcgtcgctccccatcacctcgctacagacgcagccgctcccccagacgg
aggagccgatctccgaagaggcggagcccctccccccggagagagcgccatcgcagcaag
agcccccgcagacaccgcagccggtcccgggaccggcgccaccgctccaaatccccaggt
caccacagaagccaccgacatcgcagccactcaaagtctccagagaggagttcaaaaaag
agtcacaagaagagtcggagaaacgagtga
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