Hippoglossus stenolepis (Pacific halibut): 118121549
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Entry
118121549 CDS
T08308
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03013
Nucleocytoplasmic transport
hsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118121549
03015 mRNA surveillance pathway
118121549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118121549
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118121549
5.6.2.5 RNA 5'-3' helicase
118121549
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118121549
mRNA cycle factors
Common to processing body (P body) and stress granule
118121549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
118121549
NCBI-ProteinID:
XP_035033409
LinkDB
All DBs
Position
14:complement(8805307..8819582)
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AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQVNG
PDEALLNGGVEDSVAKASQLLTELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPMWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAAGRPSMYFQTHDQIGMIGAGPGHMAA
LNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSGNQGTGQGNGPN
SQVSQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcccagaccctcaccttcttggacaccgaggaa
gcggagctgctcggagcggacacccagggctccgagtacgatttcaccgacttcacgcta
cccagccagacgcagacccaaggccagacccagagccagctggacggccaggtcaatggt
cctgatgaggctctcctgaacggtggagtggaggactccgtggccaaagccagtcagctg
ctgaccgagctcaacttcgaggaggatgaggaggacacgtactacaccaaagacctgccc
gtgcacgcatgcagctactgtggtatccatgatccagcatgtgtggtgtactgcaacacc
agcaagaagtggttctgtaatggacgtggcaacacatctggcagccacattgtgaaccac
ttggtgagagccaaatgcaaagaggtgactctgcataaagatgggccactgggagagacg
gtgctggagtgttacaactgcggctgtcgaaatgtcttcctgctgggcttcatcccggcc
aaagctgattccgtggtggtgttactctgcaggcagccctgtgctagccagagtagctta
aaagacatcaactgggacagctcgcagtggcaaccactgatccaggatcgttgctttctg
tcctggctggtgaagatcccctcggagcaggagcagcttcgggcacgccagatcaccgcc
cagcagatcaacaagcttgaggagctctggaaggacaatcccaccgccaccttggaggac
ttggagaaaccgggcgtggatgaggaaccccagcatgtgctgctgcggtacgaggacgcc
taccagtaccaaaacatctttggcccgctggtcaaactggaggctgactacgacaagaag
cttaaggagtcccagacccaagacaatataacagtcaggtgggacctgggtctgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgcggctgatgcag
ggtgatgaaatctgcctgcgatacaaaggagatctggccccgatgtggaaaggcattggt
catgtcatcaaagtccctgacaactatggagatgaaattgccatcgagttgcggagcagc
gttggagcacctgtggaaatcccccacaacttccaagtggactttgtgtggaagtcaact
tcctttgacaggatgcaaagcgccctgaagacgtttgcagtggatgagacttctgtgtct
ggttacatttaccacaaactgctgggccatgaggtggaggatgtcaccatcaagtgccag
ctgccaaagcgcttcactgctcagggcttgcctgacctcaatcactcacaggtgtatgct
gtgaagacggtgctgcagaggcctctcagtctaattcagggtcctcccggcaccggaaag
actgtcacctctgccactattgtttaccacctgtcccgacagggcaatggcccagttctg
gtgtgtgctcccagtaacatcgctgtggaccagttgaccgagaagattgacaagactgga
ctaaaggtcgtcaggctgtgcgccaagagccgtgaggccatcgagtcacccgtgtctttt
ctggctctgcacaaccagatcagcaacatggacagtatgcctgagctacagaagctgcaa
cagctgaaggatgagactggtgagctgtcgtctgctgatgagaaacgctacagggctttg
aagcgcaccgctgagagggagctgctcatgaatgctgatgtgatctgctgcacctgtgtc
ggggctggagacccccgcctggccaagatgcagttccgctccatcctgattgatgagagc
acccaggccaccgagccggagtgtatggtgcccgtggtgttgggagccaagcagctcatt
ctggtgggcgaccactgccagctgggtcctgtagtgatgtgtaagaaggcagctaaggca
ggtctgtcccagtccttgtttgagcgcttggtggttctgggcatccgaccaatccgcctg
caggtccagtaccgcatgcaccctgccctcagtgccttcccttccaacattttctacgag
ggctccctgcagaatggcgtcaccgcagctgaccgcattaagaagggcttcgacttccag
tggccacagccggacaagcccatgttcttctacgtgactcagggccaggaggagatagcc
agctctggaacctcctacctcaacaggaccgaggctgccaatgtggagaagatcaccacc
aggctgctgaaggctggagccaaacccgaccaaatcggcatcatcaccccatacgagggt
cagcgctcttacctggtccagtacatgcagttcagtggctccctgcacaccaaactctat
cagcaagtggaaattgccagcgtggacgccttccagggcagagagaaggacttcatcatt
ctctcctgcgtccgtgccaatgagcatcagggcatcggcttcctgaatgaccctcgtcgt
ctcaacgtggcgctgaccagagccaagtatggtgtgatcattgtggggaacccgaaggcc
ctctccaagcagccgctgtggaacaacctgctgaacaactacaaggagcagaaggtcctg
gtggaggggcccctcaacaacctgagggagagcctcatgcagttcagcaagcctcgcaag
ctggtcaacaccatcaaccctggtgggcgttttatgagcactgcgatgtatgatgcccga
gaggccctcatccctggctccgcctacgaccgcagcaatgctgccggacgtccgtccatg
tactttcaaactcatgaccagatcgggatgattggggccggccccggtcacatggccgcc
ctgaatatccccatacccttcaacctggtgatgcctcctatgcctccacccagctacttg
ggtcagaccaacggccccgctgcaggtcgtggggctatgaagggtaagcctgggcgtggc
gggcggcagagggtccgtggctctgggaaccagggcaccggtcagggtaatggaccaaac
agccaggtcagccaggatggggcctcccagtccttctcccaggggccactgacacaaggc
tacatatccatgagccagccctctcagatgagccagcctggcctttcccagccagagctc
tcccaggatagctacctgggagatgagttcaagtcccaaattgacgtggctctgtcccag
gactcaacttaccagggtgaacgtgcgtatcagcatggcggagtgactggactgtcacag
tattaa
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