Hippoglossus stenolepis (Pacific halibut): 118121745
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Entry
118121745 CDS
T08308
Symbol
ncam1a
Name
(RefSeq) neural cell adhesion molecule 1a isoform X5
KO
K06491
neural cell adhesion molecule
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
hsp04514
Cell adhesion molecule (CAM) interaction
hsp04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
118121745 (ncam1a)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
118121745 (ncam1a)
04517 IgSF CAM signaling
118121745 (ncam1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118121745 (ncam1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118121745 (ncam1a)
04090 CD molecules [BR:
hsp04090
]
118121745 (ncam1a)
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118121745 (ncam1a)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
hsp00537
]
118121745 (ncam1a)
04091 Lectins [BR:
hsp04091
]
118121745 (ncam1a)
Membrane trafficking [BR:
hsp04131
]
Exocytosis
Tethering complex
Exocyst complex assembly proteins
118121745 (ncam1a)
Cell adhesion molecules [BR:
hsp04515
]
Immunoglobulin superfamily
NCAM1/2
118121745 (ncam1a)
CD molecules [BR:
hsp04090
]
Proteins
118121745 (ncam1a)
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
118121745 (ncam1a)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
hsp00537
]
Others
118121745 (ncam1a)
Lectins [BR:
hsp04091
]
I-type lectins (Siglecs)
118121745 (ncam1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
FN3_DSCAM-DSCAML_C
V-set
C2-set_2
Ig_PDGFR_d4
Adeno_E3_CR1
C2-set_3
Fn3_VIN3
Pur_ac_phosph_N
Motif
Other DBs
NCBI-GeneID:
118121745
NCBI-ProteinID:
XP_035033716
LinkDB
All DBs
Position
15:complement(20477423..20707072)
Genome browser
AA seq
1009 aa
AA seq
DB search
MLQTRDIIWGLLFIGCAAAIRVEITPTQGEISVGESKFFLCEVVGDAKDIDWYAPSGEKI
LPNRQDIFVSRSDESMSTLTIYHANVDSAGIYKCVAKNGEKEAQATVQVKIFQKITFESA
PSQQEFNDGDDAEIVCDVISSPPPTIIWKHKGAKIQLAKDVRFRIMMNGHLQIRGIKKTD
EGMYTCEARVMARGEIDFRMIKVVINVLPTIRARQSEVNATADIGGSALLACDADGFPEP
TVTWAHNNVVLETGDKYGLNEDGSELEIKDVTKVDEGEYTCIARNKAGEKAEEVSLNVFV
QPKITYLNNHTASEFDEQVTLTCEASGDPTPTISWSFQNRVFTEGEQSLDRNIVVRSHAR
ISSLTLKNVQFTYAGQYLCTASNSIGQDNQHMHLEVRYAPKILGGVMTYTWEGNTANISC
EVEAHPGASVVWFREDLPLPSANATNIKIYNTPTGSNLEITPDSGDFGSYNCTAGNAMGT
EHKEFLLIQADVPSSPEIQYVEPFSSTAVAVFEEPDATGGVPITKYKVEWRLPGQDWTGR
EYEADDDTSRITIVGLKPETTYELKMSAINGKGEGESSEAKTFKTEPVRYSFTISSAIPP
TTAATSLASKGEPSAPILELNVQNRGNSLKVNWIKQDDGGLPIKHYLVRYKAKHASDWKP
EIRLPNVSEYVVLSGLDWNTDYEVHVVAENQQGKSEPATLAFRTTTEPTTVPDATDSVSG
LGTGAIVGILIVIFFLLLVGVDVTCYFLNKCGLLMCIAVNFCGKAGPGAKSKDIEEGKAA
FTKDESKEPIVEVRTEEENRPNQEGGAPTEPNETTPLTEPEPAAAADTTPPVANLLPATA
TNSVTESFSTAHSSPASESTTITTSASSPTKAAPPKNSPVAQSGSLKANTQPDVGPLVDL
SDTPKVPPSSNPTPAASEAVSSPSANADGPQSQSEPVKAPDSSKDLQVDGPSKDPPNAPC
TDSTTTAQHDGKTVKDDNAKGETEVKNATAEVKTVPNEAPQANGNESKA
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaaacaagggacatcatctggggattgctgttcattggctgcgcagccgccatc
cgggtggaaatcactccgacgcaaggagagatcagcgtgggagagtccaaattcttcctc
tgcgaagtggtgggagatgctaaagacatagactggtatgcgcccagcggggagaagatc
cttcccaacaggcaggacatctttgtgagccgcagcgatgaatccatgtccaccctcacc
atataccacgccaacgtggacagcgctggcatctacaagtgcgtggcaaagaacggggag
aaggaggcgcaggccaccgtccaagtgaagatcttccagaagatcaccttcgagagcgcc
ccgagccagcaggagttcaacgacggcgacgacgccgagatagtctgcgacgtgatcagt
tcaccgccacccaccatcatctggaagcacaagggcgccaagatccaactcgccaaagac
gttcgcttcaggatcatgatgaacggccacctgcagatacgcggcatcaagaagacggat
gagggcatgtacacctgcgaggcccgggtcatggccaggggagaaatcgacttcaggatg
atcaaggtcgtcattaatgtgcttcccaccatccgggccaggcagtcagaggtcaacgcc
acagctgacatcgggggctcggctctgttggcctgtgatgccgacggcttccctgaaccc
accgtcacctgggcacataacaacgtcgtccttgaaacgggcgataagtacggcctgaac
gaggacggctcagaattggaaataaaagatgtcacgaaagtggatgaaggagaatacact
tgcatcgccaggaacaaggcgggggagaaggcggaggaagtcagcctcaacgtgtttgtg
caaccgaagatcacctacttgaacaaccacactgcctccgagtttgacgagcaggtcacg
ctgacctgcgaggcctcgggcgaccccacgcccaccatctcctggagctttcagaacagg
gtgtttaccgaaggagagcagagccttgacaggaacatcgtggtgcgcagccacgcgcgg
atctcctctctcaccttgaaaaatgtgcagttcacgtacgccggccagtatctctgcacc
gccagcaactccatcggccaggacaaccagcacatgcacctggaagttcgctatgctcca
aagatcctgggtggggtgatgacgtacacgtgggagggaaacacagccaacatcagctgt
gaggtggaggctcaccccggagcgtcagtcgtctggttcagagaagacctgccgctgccc
agcgccaacgccaccaacatcaagatctacaacacgccgaccggcagcaacctggagatc
acccctgattccggtgacttcgggagctacaactgcacggcaggaaatgcaatgggcacc
gagcacaaggaattccttctcatccaagcagatgtgccatcatcgccagaaattcaatat
gtggaacctttctcgagcacagcagtggccgtgtttgaggagcccgacgccactggaggg
gttcccatcaccaagtacaaggtggaatggcgtttgcccggccaggattggactggcagg
gagtatgaagccgacgacgacacgagcaggatcaccatcgttggcctgaaaccagagacc
acctacgagctcaagatgtcggccatcaacggcaagggcgaaggcgagagcagcgaggcc
aagaccttcaagacggagccagtccgctattcttttacaatttcatcagcgattcctccc
actaccgctgccaccagtctggccagtaaaggggaacccagtgctcccatactagagctc
aacgtccagaacaggggcaattcccttaaggtcaactggatcaaacaggacgatggcggt
ttacccatcaagcactacctggtcagatacaaggctaaacacgcatctgactggaaacca
gagatccgcctccccaacgtcagcgagtacgtggtgctgagcggcctggactggaacaca
gactacgaggtgcacgtggtggcggaaaaccagcagggcaagtccgagcctgccaccctc
gccttcaggacaaccacagagcccaccaccgtcccagacgccacggacagcgtctcgggc
ctcggcaccggagccatcgtgggcatcctcatcgtcatcttcttcctgctgctggtgggc
gtcgacgtcacctgctacttcctcaacaagtgcggactcctcatgtgcatcgctgtgaac
ttctgcgggaaggccggccccggggccaagagcaaggacatcgaggagggcaaggccgca
ttcacgaaggatgagtccaaggagccgatcgtcgaggtgagaacggaggaagaaaaccgc
ccgaaccaagaggggggggctcccacagagcccaacgagaccacgcctctgacagaacct
gagcccgccgctgctgccgacaccacccccccggtggcaaacttgctccccgccactgcc
actaactcagttaccgagagctttagcacggcacacagcagccctgctagcgagagcacc
acgataaccaccagcgcctccagcccgaccaaagccgcccctccaaaaaacagccccgtt
gcccagtccggttctcttaaagctaacacccagcctgatgtcgggcccctggtcgacctg
agcgacacccctaaagtccccccctcctccaacccaacacccgccgcctcagaggcagtc
agctcgccctccgctaacgccgatggcccacagagccagagcgagccagtcaaagccccc
gacagcagtaaggacttacaggtagacggcccgagcaaggacccccccaatgccccgtgc
acagactcgaccacgacagctcaacatgacggcaaaactgtgaaggatgataacgccaaa
ggcgagacggaggtgaagaacgccacggccgaggtgaagacggtccccaacgaggctccc
caggcgaacggcaacgagagtaaagcgtaa
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