Hippoglossus stenolepis (Pacific halibut): 118121810
Help
Entry
118121810 CDS
T08308
Symbol
hmgb1a
Name
(RefSeq) high mobility group protein B1a
KO
K10802
high mobility group protein B1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03410
Base excision repair
hsp04140
Autophagy - animal
hsp04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
118121810 (hmgb1a)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118121810 (hmgb1a)
09143 Cell growth and death
04217 Necroptosis
118121810 (hmgb1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hsp03036
]
118121810 (hmgb1a)
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118121810 (hmgb1a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsp04147
]
118121810 (hmgb1a)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
118121810 (hmgb1a)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
118121810 (hmgb1a)
MMR (mismatch excision repair)
Other MMR factors
118121810 (hmgb1a)
Exosome [BR:
hsp04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
118121810 (hmgb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
HMG_box_5
NOA36
Motif
Other DBs
NCBI-GeneID:
118121810
NCBI-ProteinID:
XP_035033875
LinkDB
All DBs
Position
15:18276585..18280515
Genome browser
AA seq
208 aa
AA seq
DB search
MGKDPTKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFE
DLARTDKARYEREMMSYVPVRGGGGKKKRFKDPNAPKRPPSAFFIFCADFRPKVKGETPG
ATIGDVAKRLGEMWNGTAAEDKQPYEKKAAKLKEKYEKDIAAYRAKGKPGSAAPGKAPAK
AEKKVENDDDDDDEDDEEEEDDDDDDDE
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atggggaaggatccaaccaagccgagggggaagatgtcctcctatgcatactttgtgcag
acctgtcgggaggagcacaagaagaagcaccctgaagcttccgttaacttttccgagttc
tccaagaagtgctctgagcgatggaagacaatgtctgccaaggagaagggcaagtttgag
gacctggcccgaacggacaaggcccgttatgagagagagatgatgagctatgtcccagtc
agaggaggaggaggaaagaagaagaggttcaaggaccccaatgcccccaagagaccccca
tctgccttcttcatcttttgcgcagacttccgccctaaggtgaaaggtgagacccctggt
gctaccattggtgatgttgccaagaggctgggtgagatgtggaacggcaccgctgcagag
gacaagcagccctacgagaagaaggctgctaaactgaaggagaagtatgagaaggatatc
gctgcataccgtgctaagggcaaaccaggcagcgcagcgccaggaaaagccccggccaag
gctgagaagaaggttgaaaatgatgatgatgatgatgatgaagatgacgaggaggaggaa
gacgatgatgatgatgatgacgagtag
DBGET
integrated database retrieval system
