Hippoglossus stenolepis (Pacific halibut): 118121811
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Entry
118121811 CDS
T08308
Symbol
cltca
Name
(RefSeq) clathrin, heavy chain a (Hc) isoform X1
KO
K04646
clathrin heavy chain
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04142
Lysosome
hsp04144
Endocytosis
hsp05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
118121811 (cltca)
04142 Lysosome
118121811 (cltca)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
118121811 (cltca)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118121811 (cltca)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsp04147
]
118121811 (cltca)
Membrane trafficking [BR:
hsp04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
118121811 (cltca)
Exosome [BR:
hsp04147
]
Exosomal proteins
Proteins found in most exosomes
118121811 (cltca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
TPR_1
ANAPC3
Motif
Other DBs
NCBI-GeneID:
118121811
NCBI-ProteinID:
XP_035033876
LinkDB
All DBs
Position
15:complement(5296290..5328772)
Genome browser
AA seq
1686 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICVREKVGEQSQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDASKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDTAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAASFAQFKMEGNSEESTLFCFAVRGQAGGKLHIIEVGTPPTA
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEATSGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRLAVRNNLAG
AEELFARKFNNLFAAGNFSEAAKVAANAPKGILRTPDTIRRFQSVPTQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKAVDPTLALSVY
LRANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRINPEQGLQFAQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTNYDRPHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVVGGLLDVDCSEDVIKSLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNNPERFLRENPF
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASV
LLESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYISRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQQGLVKEAIDSYIKADDPSAYME
VVQAADKSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMM
NHPSDAWKEGQFKDIITKVANVELYYKATQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFF
SKVKQLPLVKPYLRSVQNHNNKSVNEALNNLFIIEEDYQALRTSIDAYDNFDNISLAQRL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLSWFLM
ENKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAVTEQVDN
LETSESVRKEEEQEAETQPIVYGTPQLMLTAGPSVPVPPQQAYGYGYQAPAGYVQPAAQP
GFGYSM
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcctgcctattcgctttcaggagcacctgcagctccaaaacttagggatc
aacccagccaacatcggcttcagcacactcaccatggagtcggacaagtttatctgtgtg
cgggagaaggtgggcgagcagtctcaggtggtgatcattgacatggccgacccaaataca
cctatccgcaggcccatctcagctgacagcgccatcatgaatccagccagcaaggtcatt
gcgctcaaagacgcctccaaaacccttcagattttcaacattgagatgaagagcaagatg
aaggcacacaccatgacggacgatgttaccttctggaagtggatctcccttaacacagtt
gcacttgtgactgacactgccgtctaccactggagcatggagggtgactcgcagcctgtg
aaagtctttgaccgccactccagcctggcaggctgtcagatcatcaactaccgcactgac
gctaagcagaaatggctcctgctcatcggcatctcagcccagcaaaatcgggtagtggga
gccatgcagctctactctgttgacagaaaagtttctcagcccatcgaaggccatgcagcc
agctttgctcagttcaagatggagggaaattcagaggagtcaactttgttctgctttgct
gtcagaggccaagctggaggaaagttgcatatcatagaagtgggaactccaccaactgcc
aaccagccatttccaaagaaagcagtggatgtgttcttccctccagaagcccagaacgac
ttccctgtggccatgcagataagctccaagcaagatgtggttttccttattaccaaatat
ggctacatccacttgtatgacttggagaccggcacctgcatctacatgaaccgcatcagt
ggagagaccatctttgtcaccgctccacatgaggccacctcgggtatcattggggtcaac
aggaaaggacaggtgctgtccgtgtgcgtggaagaggaaaacatcatcccctacatcacc
aacgtcctgcagaatccagacctggctctccgcctagcggtccgcaacaacctcgccggc
gctgaagagctctttgcgcgcaagttcaacaacctttttgctgctggcaacttctctgag
gctgccaaagtagctgccaatgcaccaaagggtatccttcgtaccccagacaccatccgt
cgcttccagagtgttccgactcagccaggccagacctcccccttgctccagtactttggt
atcctgttggaccagggccagctcaacaagttcgagtccctggagctctgcaggcccgtc
ctgcagcaggggcgaaagcaacttctggagaagtggctgaaggaagacaagttggagtgt
tcagaggaacttggtgacctggtgaaggcagtggatcctaccttggctctcagtgtctac
ctgagggccaacgtcccaaacaaagtcattcagtgttttgcagagactggtcagttcccc
aagatcgtcctgtacgccaagaaggtgggctacactccagactggatctttctgctgagg
aatgttatgcggatcaacccagaacaaggcctgcagtttgcccagatgcttgttcaggat
gaagagccgctggctgacatcacacagatcgtggatgtgttcatggagtacaacctgatc
cagcagtgcacgtcattcctcctggacgctttgaagaacaacagaccctcagaaggaccc
ctgcagactcggctgctggagatgaacctcatgcatgctccacaggttgctgatgctatc
ctaggcaaccaaatgttcaccaactacgatcgtccccacatcgcccagctgtgtgagaag
gctggactcctgcaaagggctctggagcactacactgacctgtacgacatcaagcgggct
gttgtgcacacacacctgctcaacccagagtggctggtgaacttctttggctcgctgtca
gtcgaagactctctggagtgcctcagggccatgttgtcggccaacatccgccagaacctg
cagatctgtgtccaggtggcttccaagtaccacgagcagctcagcacacagtctctcact
gagctctttgagtcattcaagagctttgaaggtctgttctacttcctgggctctattgtg
aacttcagtcaagaccctgaagttcacttcaaatacatccaggccgcttgcaagacaggc
cagataaaagaggtggagaggatctgtcgagagagcaactgctacgaccctgagcgcgtc
aaaaacttcctcaaggaagccaaactcaccgaccagctgccgctcatcatcgtctgtgac
cgtttcgactttgtccatgacctggtcctctacctgtatcgcaacaacctgcagaagtac
attgagatctatgttcagaaggtgaaccctagccgtctgcctgttgtggttggtggtctg
ttggacgtggactgctccgaggatgtcattaagagtctgatcctggtcgtcaggggacag
ttttccactgatgaactggtcgctgaggttgaaaagagaaacagactgaagctgctgctg
ccatggctggagtctcgtatccatgaaggctgcgaagagccagccacccacaatgccctc
gccaagatctacatcgacagcaacaacaacccagaacgcttcctgcgcgaaaacccgttc
tatgacagccgtgtggtgggaaagtactgcgagaagagagacccccacctggcctgtgtg
gcctatgagagaggacagtgtgaccaggagctgatcaatgtctgcaatgagaactccctg
ttcaagagcctttctcgctatttggtccgtcgcaaagatcctgagctgtgggctagcgtg
ctgctcgagagcaaccccttcagaagaccactcattgaccaggtggtgcaaacagcactg
tcagaaacccaggacccagaggaggtgtcagtcacagtcaaggccttcatgaccgcagat
ttaccgaatgagctcattgagctgctggagaagattgtattggacaactccgtcttcagt
gaacacaggaatctgcagaatctgctgatcctgaccgctatcaaagctgaccgcactcgt
gtgatggagtacatcagcaggctagacaactatgacgctcctgatatcgcaaacatcgcc
atcagcaatgagctctttgaggaggcctttgccattttcaagaagtttgacgtcaacact
tctgctgtgcaggtgctgatcgagcatattggcaacctggaccgggcctatgagtttgca
gaacgctgcaatgagccagctgtgtggagccagctggctaaggctcagctacagcaaggc
ctagttaaggaggccatcgactcctacatcaaagctgatgacccctctgcgtacatggag
gtggtgcaggctgctgataaaagtggtaactgggaggacttggtcaaatttcttcagatg
gctcgtaagaaggcccgtgagtcctacgttgaaacagagctcatctttgctttggccaaa
accaatcgcctggcagaactggaagagtttattaatggacccaacaatgctcacatccag
caggtcggtgatcgctgctatgatgagaaaatgtacgatgccgcaaagctgctgtacaac
aatgtctccaactttggccgtttggcttcgaccctcgtgcaccttggggagtaccaggct
gcagtggacggcgcccgcaaggccaacagcacccgcacctggaaagaggtgtgcttcgcc
tgcgtggatggaaaggagttcagactggcccagatgtgtggtctccacattgtggttcac
gctgatgagctggaggagctgatcaactactaccaagaccgcggttactttgaggagctg
atcacaatgctggaagccgccctgggcctggagcgcgctcacatgggaatgttcacagag
ctggccattctttactccaagttcaagccccagaagatgagagagcatctggagctcttt
tggtccagagttaacattccaaaggtgctgagagcagcagagcaggcgcacctgtgggcc
gagcttgtcttcctctacgacaagtatgaggagttcgacaacgccatcatcaccatgatg
aaccacccgtcggacgcctggaaagagggacagttcaaagacatcatcacaaaggtggcc
aacgtggagctgtactacaaagccacccagttctatctggagtttaagcccttgttactg
aatgatttgctcatagtgctttctcccagactggaccactcccgtgctgtcaacttcttc
agcaaggtgaaacagctgcctctggtcaaaccatacctgcggtcagtacagaaccacaac
aacaaatcagtcaatgaagcacttaacaatctcttcatcatagaggaggactatcaggct
ctgagaacatcaatagatgcctacgacaactttgacaacatctcgctggcccagcgcttg
gagaagcacgagctgattgagttcaggcgaatcgccgcctacctcttcaagggcaacaac
cgctggaaacagagtgtggaactctgcaagaaggataaactctataaggatgccatgcag
tatgcatcagagtccaaggacacagagctggcagaggagctgctttcctggttcctcatg
gagaacaagaaggagtgtttcgctgcctgcctgtttacctgctatgacctgctgcgacct
gacgtggtgctggagaccgcctggaggcacaacatcatggacttttctatgccatacttc
attcaggtcatgagggaatacctcagcaaggttgatgcagttacagaacaggtagataat
ctagaaacctcagagtctgtaaggaaagaggaggagcaggaagcagagacgcaacccatc
gtctatggcacaccacagctgatgctgacggcgggccccagcgtacccgtgccccctcag
caagcctacggctacggctaccaggcacctgcaggatacgttcagccggcagctcagccg
ggcttcggctacagcatgtaa
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integrated database retrieval system
