Hippoglossus stenolepis (Pacific halibut): 118121885
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Entry
118121885 CDS
T08308
Name
(RefSeq) transcriptional regulator ATRX
KO
K10779
transcriptional regulator ATRX
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
118121885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118121885
03036 Chromosome and associated proteins [BR:
hsp03036
]
118121885
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
118121885
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
118121885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
118121885
NCBI-ProteinID:
XP_035034002
LinkDB
All DBs
Position
15:9333500..9353805
Genome browser
AA seq
1908 aa
AA seq
DB search
MSAAMLSTTTNKLNVLVNKLHEYLAHSTVEDNNGTPTSEDADDLKNSSCSVGNSRGETAA
EPGVDTRYSRRKPSVVTKHSGLDESGDSNASEDVDLPATGNGHLDITRLPKGTVLVRPEP
VDNGRDDFRGPEFRSRKSNVLRKEFSRRRGGVEQMGIVSCTACGRQVNHFQRDSFYRHPI
LKVLICKTCYKYYLSDDISKDGDGMDEQCRWCAEGGNLICCDFCSNAFCKKCILRNLGRK
ELSGILESKWYCYVCSPEPLCDLVLACDSVLDNMEHIWQQQRRRNRAGPEKSELYGILPH
SPSNIPLGMDGNVVFNYNTLQISKEVTKKAKHLVDSTNMLNRTFINFIHTVTVNKKTPAV
RHLYFKSFLSVVKGLRRSLTVFEENLKEEFSDMDVLSNWEKLLSDGFETQPVTDTELDVS
NERCLSDLQKLAAEHMEDEDSESKGFIDGRSPHECPREDMDLDSHEAGQSTQKTSPKPSE
TGVSMTKKLVVKLTPVPMEQEPSSHAPKMQEDIHTRDKKPKKRDVSEDKETGVVPSKTDS
KLSSDSTSTSLHLEEEQGNRRSPRVKTTPLRRPSDVKAQTSLSAADSDSDSDPEETPSTV
QAKNTEEQSLRPARDDSDSDEVPPALLERAAMTQSSDEAQSDDDGGKASTQVAKKCLFWL
TKNTPISPETIRRKRKMLDRSHESDSSERRVKARREIGADNFSDNQDSQKKIKHLNTLRP
IGKPHLMKREEEAVARKQGRLQAGKSKTKAHQEELESPSSSEEDERDDDSGSDGSDQKMK
PITEDVALLGAAAFHQSSGDEEQSGPSWAAEDDDDPENRIAKKMLLAQIKANYSSGDEIY
SEEDTPEEESESEGGDEVKQGNQENGADENGEDLASQPSDNTSEDSISRHHLLRHKLTLD
EGTTSDKGAKESEVGKKGRKKKAGSQSQSSDGESGDDSDETNIDDLGLSEVLSESEEETN
EDKLKRLSTKVKENLSSSQQKEQVQCIWLSDTDSEKEQNDPEDGDEGTDGTKQRKKIRKI
IDNENLRAETQEALREEEERCKRLAEREQQMEDRREIIVIEDELSQVVCPVTTKLVLDQD
EETKEPLVQVHRNLVTRLKPHQVDGVQFIWDSCCESVKKANSSPGSGCILAHCMGLGKTL
QVVTFLHTVLLSTNLKFRTGLVVCPLNTNLNWVSEFKKWQNKMGEDKVKVRELATVKSTP
ERLLALQAWQREGGVMIMGYELYRILSSAKNMNNEECKTQLKKILVDPGPDFVICDEGHI
LRNESSGISKALNGIRTRRRVVLTGTPMQNNLVEYHCMVNFIKKNLLGSLGEFRNRFINP
IENGQCADSTPKDVRIMKKRAHVLHAMLVGCVQRRDYSELTQFLPPKHEYVLAVRVSPLQ
YKLYRYYLDHVSGVGPMLNSVKIKIGANLFKDFQALGRIWTHPWCLQLSLTNKEKKRNTK
RKNQVTVAAPLRNQQPSATESRLRENNGTGGNNPNNSAMVNVYASKAAPAVPGETATLSP
RSDEGWYKSMLSESDATILQHSGKMVLLFEILRMAEDLDEKVLVFSQSLVSLNLIEDFLA
ASHHARDPAAFKVGSWIKNIDYYRLDGAVNATNRQKWADLFNNPANIRGRLFLISTKAGS
LGINLVAANRVIIFDASWNPSYDIQSIYRVYRFGQLKQVFVYRFLAQGTMEEKIYDRQVI
KQSLSYRVVDQQQIERHFTLFELKELYTFEPDLLNDPNSKKSKRTTSALPKDQILTTLLE
TCKDQIVSYHEHESLLDHKQDEELSEAERKAAWAEYEAESKTPSLPVSSGQDTFEKKTNE
ELLELLNKCRTNVSVAFLSLQRMTSHTIADYMLQTRQQYPHLLEHEMKIKAEIWRTCDQK
EQDRRKAFYKEVLSQQQTLTLRIQAILNSRRNQEMQAAAATVNQPAQM
NT seq
5727 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagcgatgctcagcactaccaccaacaagttgaatgtattggtcaacaagcta
cacgagtacttagcgcattccaccgttgaggacaacaatggcacaccaacctcagaggat
gctgatgatctgaaaaacagcagctgttctgtgggaaactcaagaggcgagactgcagca
gagccaggtgtggataccagatactcaaggagaaaaccttctgttgtcacaaagcactct
ggactagatgaatcaggggattcaaatgcaagtgaggacgttgatttaccagccaccgga
aatggtcacctcgatatcacaagactgcctaaaggcactgtactggtcaggcctgaacca
gttgataatggaagagatgacttcaggggtcctgagtttcgcagccgaaaatccaacgta
ctgcgaaaagagttctcaagaagacgtggaggagttgaacaaatgggaatcgtcagttgc
actgcatgtggccgacaagtgaaccactttcagagagattccttctaccggcatccaatt
ctgaaagtacttatttgcaagacttgctacaagtattacttaagtgacgacatcagcaag
gatggagatggaatggacgagcagtgcagatggtgtgctgaaggaggcaacttgatctgt
tgcgacttctgtagtaacgccttctgcaagaagtgtattctaagaaacctgggaaggaag
gagctgtctggcatcttggagagtaaatggtactgctacgtgtgcagcccagagcccctt
tgtgatctggtgttggcttgtgacagcgtcctcgataacatggagcatatatggcaacag
cagcgcaggagaaaccgagcggggccagagaaatctgaactctacggcatcttgccacac
tcaccatcaaacattcctttgggtatggatggtaatgtggtgttcaactacaacaccctg
cagatttccaaggaggtgacaaaaaaagcgaaacatttagtggattctaccaacatgtta
aaccgaacatttatcaatttcattcatactgtgacggtaaacaaaaaaacacctgctgtt
cgccatttgtactttaagtcttttttgtcagtcgttaaaggcttgagaagatcactcact
gtatttgaagaaaaccttaaggaagaatttagtgacatggacgtattaagcaattgggag
aaactccttagtgatggctttgaaacacaacctgtgacagacacagagctggatgtctct
aacgaaagatgcttgagtgacttgcagaaattggcagctgaacatatggaagatgaggat
tctgaatccaagggattcatagatgggagaagtccacatgagtgccccagggaggacatg
gatttagattcacacgaagctggacagagcacgcaaaagacgagcccaaagccgtctgaa
acaggggtcagcatgacaaaaaaactagttgtaaaacttacacctgtgcctatggagcag
gagccctcctctcatgccccaaagatgcaagaggacattcacacaagggataaaaagcca
aaaaaaagagatgtatcagaagataaggagacgggtgttgtgccttctaaaactgacagc
aagctgagcagtgacagcactagtacatctctacacctagaagaggaacaaggcaataga
cggtctcctcgtgtgaagacgacacctttgcgtcgaccaagtgatgtcaaggcccaaaca
tctctttcagcagcagacagtgacagcgattctgaccctgaggaaacacccagcactgta
caagccaaaaacactgaagaacaaagtctgaggccagcaagggacgactctgactcagac
gaagtccctccagctctgcttgagcgagcagctatgacacaaagctctgatgaagcccag
agtgatgatgatggtggcaaagcgtcaactcaggttgccaagaaatgtctgttttggctc
acgaagaacaccccgatctcaccggagacgatacgccgcaaacgcaagatgctggatcgc
tcccacgagtccgactcgagcgagagaagagtcaaagcccggagggaaataggggccgat
aactttagtgacaatcaagactcgcagaagaaaataaaacacttgaacacgctgaggccg
atagggaagcctcacctcatgaaacgagaggaggaagctgtggcgagaaagcagggaagg
ttacaggctgggaagtctaagactaaagctcatcaggaagaattggaatcgccgtcatcg
agtgaagaagatgaacgtgatgatgactctgggagcgacggaagtgatcagaaaatgaag
ccaatcactgaagatgtggccttgctgggggcagcggcattccaccaatcatcaggagat
gaggagcagtctgggccctcgtgggcagcagaagatgatgatgatccagaaaatagaatc
gctaagaaaatgcttttggcccaaatcaaagccaactactcgtcgggggatgaaatctat
tcggaggaggacacgccggaggaggaatctgagtctgaaggtggtgatgaggtcaaacaa
ggcaatcaggaaaatggagcagatgaaaatggggaagacttggcttcacaaccctctgac
aacacgtctgaggattccatctccagacaccatctgctccgacacaaacttaccttagac
gaggggacgacaagtgacaagggagcaaaagagagcgaagttggaaagaaggggaggaag
aaaaaagctggcagccaatcccagagctctgatggtgaaagtggcgatgacagtgacgag
acgaatattgacgaccttggattgagcgaagtgctgagtgaatcagaagaggagaccaat
gaagacaagctcaaacgtctgtccactaaggtgaaggaaaaccttagtagttctcaacag
aaggaacaagtccaatgcatttggttgtctgacactgacagtgaaaaggagcagaatgat
ccggaggatggtgatgaggggactgacggtacaaaacaacgcaaaaagatccgcaaaatc
atcgacaacgagaacctccgcgccgagacccaggaagcactgagagaggaggaggagagg
tgcaaacgcctggcagaaagggaacaacaaatggaagacaggagagagatcattgttata
gaggatgagctgtctcaggtggtttgtccggtcaccacaaagctggtcctggatcaggac
gaggagaccaaggagcccctggttcaggtgcacaggaacctggtgacaagactgaagcct
caccaggtggacggtgtccagtttatttgggacagttgttgtgagtctgtgaagaaggcc
aactcttcaccggggtcaggctgtatactggcacactgcatgggcctggggaagactctg
caggtggtaacgttcctccacacagtgctgctctcaactaacctgaaattcagaactggc
ctggtcgtgtgtccactcaacacgaacctcaactgggtcagcgagttcaagaaatggcaa
aacaaaatgggagaagacaaagtcaaggttagagaactggccacagtgaaaagcactcca
gaacgactccttgctctgcaggcgtggcagagagaaggaggagttatgataatggggtac
gagctttatcgcatcctgtcatcagccaagaatatgaacaatgaggagtgtaagacacag
ctaaagaagatcctggtggacccaggcccagattttgtgatttgtgacgaggggcacatc
ctccgcaacgaatcatccggcatctccaaggcattgaatggcatcaggactcggcgaaga
gtggtgctgactggaacaccgatgcagaacaacctggtcgagtaccactgcatggtcaac
ttcatcaagaagaatcttctgggctcattgggcgaattccgaaaccgcttcatcaacccc
atcgagaacggccagtgtgccgactcaacaccgaaagacgttcgaatcatgaagaagcga
gcgcatgtgcttcatgcaatgttggttggatgtgtacagagaagagattactctgagttg
actcagtttctacctcccaaacacgagtatgtgctggcagtgcgggtttctccgctgcag
tataagttgtaccgctactacctcgaccacgtcagcggtgtgggtcccatgttgaactct
gtaaagattaagattggagcgaacctcttcaaggactttcaggcgctcggccgaatctgg
actcatccctggtgccttcagctcagcttaacgaataaagaaaaaaagagaaatacgaaa
aggaagaatcaagttacagtggcagctccgctgaggaaccaacaacccagtgcaaccgag
agtagactgagagagaacaacggaacaggaggaaacaacccaaacaacagtgcaatggtt
aatgtttatgcttccaaagctgctccagcagttccaggtgagacagcaacactcagccca
aggtccgatgaaggctggtacaagagtatgctctctgagagcgacgccactatcctgcag
cactcggggaagatggtgctcttgtttgagatcctcaggatggctgaagacctggatgag
aaagtgctcgtgttcagtcagtccttggtctcattaaacctaatcgaggatttccttgcg
gcctctcaccacgccagagacccagcagcattcaaagtcggcagctggattaaaaacatt
gattactatcgtcttgatggcgccgtcaatgctacaaacaggcagaaatgggcagatctg
ttcaacaatcctgcaaatatccgcgggcggctgtttctcatctcaacgaaagctggctct
ctcggcatcaacctcgtggctgccaacagggtcatcatctttgacgcctcgtggaatccg
tcatacgacatacagagcatatacagggtgtaccgcttcgggcagctcaaacaagtgttt
gtgtatcgcttcctggctcagggcaccatggaggagaagatctatgatcgtcaagtgatc
aagcagtccttgtcctatcgagtggtggatcaacagcagatcgagaggcacttcaccctt
ttcgagctcaaagaactttacacatttgagccagacctgctgaatgacccgaactcaaag
aaaagcaagaggaccacctctgctttgccaaaggatcagatcctgacaacgctgttggaa
acctgtaaagaccagatagtgtcgtaccacgaacacgaatctctgctggaccataaacag
gatgaggagctcagcgaagcagagcgcaaagctgcctgggccgagtacgaggccgagtca
aaaactcccagccttccagtcagctcgggtcaggacaccttcgaaaagaagaccaatgaa
gagctcttggaattacttaacaagtgcagaacaaacgtatcagtggccttcctgtcactg
cagaggatgacgtctcacaccattgccgactacatgttacaaacgcggcaacagtatcct
catctgcttgaacacgagatgaagatcaaggctgagatttggagaacgtgtgatcagaag
gagcaggatcgtcgaaaggccttttataaagaggttctttcacagcaacaaacacttacg
ctcaggattcaggccatactgaacagtcgaaggaaccaagagatgcaggcggccgcggcc
accgtcaaccagcctgcacagatgtaa
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