Hippoglossus stenolepis (Pacific halibut): 118121934
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Entry
118121934 CDS
T08308
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03030
DNA replication
hsp03420
Nucleotide excision repair
hsp03430
Mismatch repair
hsp03440
Homologous recombination
hsp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118121934
03420 Nucleotide excision repair
118121934
03430 Mismatch repair
118121934
03440 Homologous recombination
118121934
03460 Fanconi anemia pathway
118121934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118121934
03032 DNA replication proteins [BR:
hsp03032
]
118121934
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118121934
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
118121934
DNA replication proteins [BR:
hsp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
118121934
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
118121934
MMR (mismatch excision repair)
118121934
DSBR (double strand breaks repair)
HR (homologous recombination)
118121934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
Extensin_1
DUF223
Motif
Other DBs
NCBI-GeneID:
118121934
NCBI-ProteinID:
XP_035034105
LinkDB
All DBs
Position
15:18425521..18458194
Genome browser
AA seq
701 aa
AA seq
DB search
MSVELTPGAIGILFSGSQVNNPVLQLLSLRRISSSTGPNRFRLMMSDGQHSSTSFLLVSQ
LNNLAEENILEPYCVCMLKKTLTNTLADGRRIVVVIALEILQSAEETEGKIGSPTPYGTD
DGSPENSASSTLVSSSAAAPGPSNESSSTEYSPPRGSGRGFVGTSPMKASPMMASPMKAS
PMKTSPMMASPMKASPMKASPMETSTMMASPMKASPMKTSPMTASPMKFSPMKTSPMKAS
PMKFSPMKATSSSPGSSTKVMPIETLHPYQSRWTIRARVTNKSQIRTWSNSRGDGHLFSF
DIVDESGEIRVTAFNKEVDKFFPLVEQGKVYYISKATLKVANKQYTTVKNEYEMSLNAQS
SIVLCDDSQGVPALHCDFVPIAELENRENDAIVDVIGVCKSAEDVCRITTKTSREVSKRA
LSLIDTTGKVVTVTLWGKEAEKFDGSEQPVVAIKGARVSDFGGRSLSASFSSTVTVNPDM
PEAFRLRAWYDEDGFALNSQSLTSTWSGSSGMKINWKTLSDVKDESMGQGEKVDYFSCVA
TLLFTRKDSCLYQSCPSADCKKKVIDQQNGMYRCEKCNKEFPNFKYRLILSANLADFGDN
QWVTCFQETAEVLLGHTAETLGELKDTDETAFDEVFQKASFTKHIFKSRVKLETYNDESR
VKVTVIEVQPLDHREYSRRLLSNIRTLSSCTRDESFQTAAW
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagaactcacaccgggggccattggcatcctgttcagtggctcacaggtcaac
aaccctgttctgcagctgctgagcttgcggaggatcagtagttccactggaccaaacagg
ttccggcttatgatgagtgacggtcaacactcatcaacttccttcctgctggtctcgcag
ttaaacaatctggctgaagagaacatcctggaaccatactgtgtgtgtatgctgaagaag
accctcaccaacactctggcggatggcaggcgtatcgtggttgtgatcgctctggagatc
ttgcagtcggctgaggaaactgaaggaaagattggaagtcccactccatacggcacagat
gatggatctccagagaattcggcctcaagcacgttggtgtcttcatcggctgcagcacct
ggaccctccaatgagagcagcagcacagagtattctcctccccgaggcagtggaagaggt
tttgtggggacatcacccatgaaggcctcacccatgatggcctcacccatgaaggcttca
cccatgaagacatcacccatgatggcctcacccatgaaggcctcacccatgaaggcctca
cccatggagacatcaaccatgatggcctcacccatgaaggcctcacccatgaagacatca
cccatgacagcctcacccatgaagttttcgcccatgaagacgtcacctatgaaagcttca
cccatgaagttttcgcccatgaaggctacaagctcttctccaggttcttcaacaaaagtg
atgcctattgaaaccctccacccctaccaaagcaggtggactatcagagcccgagttacc
aacaagtcccaaatccgcacctggagtaactctagaggagatggccatctcttctccttt
gatatagtggatgagagtggggaaatcagggtcacagcattcaacaaggaggtggacaag
tttttccctttagtggagcaaggcaaggtgtactacatctccaaggctacgctgaaggtg
gccaacaagcagtacaccacagtgaagaacgagtatgagatgagcctcaatgcccagtcg
tccattgtgttgtgtgatgacagccagggagtccccgcactgcactgtgactttgtgccc
atcgccgagctggaaaacagagaaaatgacgccatcgttgatgttatcggtgtctgtaag
agtgcggaggatgtatgccggatcaccacgaagaccagcagagaagtctccaagagggcc
ctcagcctaatagacacaacgggcaaagtggtgacagtcacactgtggggaaaggaggca
gagaagtttgacggcagcgagcagcctgtggtcgctatcaaaggggctcgcgtgtctgat
ttcggaggcagatctctctctgcttcgttcagctcaacagtcacggtcaacccagacatg
ccagaggcctttagactgagggcctggtacgacgaggatggcttcgctctcaacagccaa
tccctgaccagcacgtggtcagggagcagcggaatgaagatcaactggaaaacactgagt
gacgtgaaggacgaaagcatgggacaaggagagaaggtagactacttcagctgtgtggcg
acgctgctgttcactcgtaaggacagttgtctgtaccagtcctgtccatctgcagactgc
aagaagaaggttatagaccaacagaacgggatgtaccgctgcgagaagtgtaacaaagag
ttccccaactttaaatacagactcatactctctgccaacttggcagacttcggggataac
cagtgggtgacatgcttccaggagacagccgaggtcttattaggtcacactgcagaaaca
ctgggcgagttaaaagacacagacgagacggcctttgatgaagtcttccagaaagccagc
ttcacgaagcacatctttaaaagcagagtcaagcttgagacgtacaatgacgagagtcga
gtcaaggtaaccgtcattgaagtccagccgctggaccacagggaatacagcaggagactc
ctcagcaacatccgcacattgtccagctgtactcgggacgagtctttccaaacggctgcg
tggtaa
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