Hippoglossus stenolepis (Pacific halibut): 118122085
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Entry
118122085 CDS
T08308
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
118122085 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118122085 (lig3)
Enzymes [BR:
hsp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118122085 (lig3)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
118122085 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
118122085
NCBI-ProteinID:
XP_035034428
LinkDB
All DBs
Position
15:21916377..21933638
Genome browser
AA seq
1019 aa
AA seq
DB search
MQRRLISFAPKTFCAGLQSLHTLVRRLTLFKVCRSSPCSSRFAHHPPPVYVFNFSKGICS
FSSVSHKNNLLRNNFPRFSQRRCCSNEPDMAEQRFIVEYAKRGTAGCKKCKDKIPKEVVR
IGKVVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKEIIN
KHVSDLMAKVNATPKKKGPAKLNTSSQLMAPPADPSLNAPRKFSGFTATKAGTSSSPGPS
SSSPAKASQGSPLSTQLCDPQHKDCLFREFRKLCATVAENNSYNVKTQIIEKYLKKGSCG
DKFRGDVYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFRSNQDDMVRDLEQGDVSETVRM
FFDESKSFPPSTKSLLTLQEVDASLTRLAQLTKEDEQQTELEEIAKKCTSNDLKCIIRLI
KHDLKMNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNTQDATNGSGPRKLLMVEAS
LMTPVQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDVFSYFSRSLKPVLPH
KVAHFKEYIPQAFPGGHSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFQDAKVCLFVFD
CIYFNGVSLMERPLRERRKFLNDNMEEVPNRILFSEMKHVTRAGDLADMITRVIREGLEG
LVLKDVKGSYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCY
DPDSKKWCTVTKCSGGYDDATLARLQKELDVIKISKEPSKIPGWLKIIKNYYPDFIIRDP
QRAPVWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLHQLKELFRISKENC
DFKVTAGPSSDDKGSSGGDSGGSSPSPSSRGGRAPPPAPPPPPAKRPSSSATPKPRVVKS
QPRTPTSEAPAAKKVKKTEDVHSNGQSKTKTTSQLLQPRNDKTLLDIFSGVKLFLPVSVQ
DFDKLRRYFVAYDGDVVEDFDSASATHTMAEPEENSPAQRVTPSWIWDCIRKRRVLPPC
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgacgtctcatctcattcgctccaaagactttctgtgccggtctacaaagtctt
cacacactcgtcagacgtctgacactcttcaaagtgtgcagatcgtctccttgctcttca
cgctttgcacatcaccctccacctgtatatgtgtttaatttttccaagggaatctgtagt
ttttcatcggtgtctcataaaaacaacctcctccgcaacaattttccacggttttcccag
cgtcggtgttgctccaacgagccagatatggcggaacagaggttcatcgtggaatacgcc
aaacgcggcacagcgggttgtaagaaatgcaaggacaaaatcccgaaggaagtcgtgcgc
atagggaaggttgtgcccaaccctttcagcgagtcggcgggcgagatgaaggagtggtat
cacgtcaagtgcatatttgagaagctggaaagggcgagagccaccacgaagaagatcgag
gacatcacggatttggagggctgggaggagctgcaggacgaggacaaggagatcatcaat
aaacatgtttcagacctgatggcaaaagtcaatgcaaccccaaagaagaaggggccagcc
aagctgaacacctcttcccagctgatggctcctcctgccgacccgtctctcaacgctcca
cgcaagttttcaggcttcacggccactaaggccggcacctccagcagcccaggcccatcc
tcctcttcccccgccaaggccagccaaggcagccccctgtccacgcagctctgcgacccc
cagcacaaggactgcctcttcagagagtttcgtaagctttgtgcaacggtggcagaaaac
aacagctacaacgtgaagacgcagatcattgagaagtatctcaagaagggctcatgtgga
gacaagttccgcggagacgtttacctcacggtgaaactgctcctgcccggcgtcgtaaag
agcgtctacaacctgaatgacaagcagatagtaaagctcttcagccgcatattcagaagc
aaccaggacgacatggtgcgcgacctcgagcagggcgacgtgtccgagacggtgaggatg
ttcttcgatgagagtaaatcatttcccccgtccaccaagagcctgctgaccctccaggag
gtggacgcgtctctgacccgcctcgcccagctgaccaaggaagacgagcagcagaccgag
ctggaggaaattgccaaaaaatgcaccagcaatgacctgaaatgcatcattcgactcatc
aagcacgacttgaagatgaactccggagctaaacacgtcttggacgctgtggatccaaac
gcttacgatgccttcaaggcctcgcgtaacctgggcgatgtgattgaacgggtgttgagg
aatacgcaggacgcgaccaacggttcgggccccaggaagctgctcatggtggaggcctct
ctcatgacccccgtccagcccatgttggccgaggcgtgcaagtccgtcgagtacgccatg
aagaagtgtcccaatgggatgttctccgagatcaaatacgacggagaacgtgtgcaggtc
cacaagaacggagacgtcttcagctacttcagccgcagcctcaaaccggtgctgccacac
aaagtggcccacttcaaagaatacatccctcaggcgttccctggtggtcacagtatgata
ttggacgctgaggttctcctaattgacacgaacaccagtaaacctctgccctttgggacc
ctgggtgttcacaagaaagctgcgtttcaagatgccaaagtttgcctttttgttttcgac
tgtatctacttcaacggtgtgagtctcatggagaggcctctgcgtgaacgcaggaagttc
ctaaacgacaacatggaagaagttcccaacaggatcctgttctcagagatgaagcacgtc
accagagcaggagatctggccgacatgatcactcgtgtgatcagagagggactggaaggc
ctcgtgctaaaagacgtaaagggctcctatgaaccgggaaagcgtcactggctgaaggtg
aagaaggactatctgaacgaaggtgcgatggcggacacggccgacctggtggtgctcggg
gctttctacggaaaaggctccaacgggggcatcatgtccagtttcctgatgggctgttac
gaccccgactccaagaaatggtgcacagtcaccaagtgctccggaggctacgatgacgcc
accctggcccggctccagaaggagctggatgtgatcaaaatcagcaaggaaccgagcaaa
atcccaggctggttgaaaatcatcaagaactattatccagatttcattatccgcgatcct
cagcgagcacccgtctgggagatcacaggcgccgagttctccaaatcagaaatgcacacg
gctgacggcatctccatccgcttcccccgcatgacgcgcatccgcgacgacaaggactgg
aagaccgccaccaacttgcaccagctcaaagagctgttccgcatatccaaggagaactgt
gacttcaaagtgacagccgggccgtccagcgacgacaagggctcatcaggaggagacagc
ggaggaagctccccgtcgccctcgtcccgcggaggcagagctcctcctcctgctcctcct
cctcctcctgccaagaggcccagcagcagcgcgacacccaaaccgagggtggtgaaatct
cagccccgcacccccacctcagaggcacctgctgccaagaaggtgaagaagactgaggac
gttcacagcaacggacaaagcaaaaccaagaccacgtctcagctgctgcagccgaggaac
gacaagacgctgctggacatcttcagcggcgtgaagctcttcctgcccgtctccgtgcag
gacttcgacaaactccggcgttacttcgtggcgtacgacggggacgtcgtggaggacttt
gactccgcctccgccacgcacaccatggccgagcccgaggagaacagcccggcccagaga
gtcacacccagctggatctgggactgtatccgcaagaggcgcgtccttcctccctgctaa
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