Hippoglossus stenolepis (Pacific halibut): 118122249
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Entry
118122249 CDS
T08308
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04270
Vascular smooth muscle contraction
hsp04625
C-type lectin receptor signaling pathway
hsp04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
118122249
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
118122249
09153 Circulatory system
04270 Vascular smooth muscle contraction
118122249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118122249
Membrane trafficking [BR:
hsp04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
118122249
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RGS-like
RhoGEF
PH_16
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
118122249
NCBI-ProteinID:
XP_047199474
LinkDB
All DBs
Position
15:21732471..21758600
Genome browser
AA seq
1457 aa
AA seq
DB search
MSVTQSTLTDRTPNILNKEPTDKKAKNDKSPVSLKHEFDPTGLVQRCVIIQRDENGFGLT
VSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHIEVVKLIKSGSYVALTVL
GRPPGLPQIPLEEDEGEGDEGAELGSPSSLSVPHSPLLSGAEPCSPQEHSASPLPDGDES
KTTHSHKMDSLQKMLTKQQLDLEVKEEECGRNPRPKLVKEMQEAKKQISLLQEQISRGLQ
AVSRSGEEAEEGDNSGPPLREPTSSSWGDGVNDRLQMNSHSLHSSPLPEGPGKRETPCQS
PNIGRRDGLNLYSSPDAEDNTDTDSVAQCIVGSPPYLLNPQIIGAEDDYFDSQQEQINGQ
CSCFQSIDLLKTRPAHLAVFLHHVVSQFDPSPLLCYLYADMHKQTSSKESRRFFMEFHSL
FMDRTANLKLPLPETIAAELEKRRLELIPEELCKQYTQLLQDSLLPDLHKNLDDFRQKRS
MGLTLAEDELSKLDVDGGKDQQGLEKECSCAEHIISKIEDILLTSQPSEEEKCQTMQYVI
LTYMKHLGVKVKEPRGLEHKRARINFLPKIKKSIKPEREGEEKVKKPRFPNILGPPRRLS
RVDSTSVGKAVELSKQRSPKPLSQPAVCIPEQPDPSASTSSSGRIRGSLLSEGSDAGLHV
SPSTTSQSHSSPSAQASDTSGQDSDSNLSPFPVQPRLGEGLQCGDQQESVVSPTQFDFSP
SNLEQLQEEEQETFRMEVPSAAATSTDIQSEDDQGGEAECEEDPLNWQALVSRGVLESLT
PQEIKRQEVINELFYTERAHLRMLKVLDCVFYQRLNRDGVLPPDDIKHIFINLEEIIQLH
VSITEQMTATRKRSETSVIGQIGDDLLAWFSEDEEEKIKRAVGTFCSNQPSALELIKNKK
KKDQRFNLFMQEAESNRLCRRLQLKDIIPVEMQRLTKYPLLLDNIAKYTEDGEEREKVKK
AGECCKKILNHVNQAVKEAENKQRLEEYQRRLDLSSLKQSENPMILELKNLDLTKRKMVH
EGPLSWKVNKDKTIELYTILLEDILVLLQKQDERLILKFHGKNPASVTDTKNIFSPIIKL
STVLVRPVATDNKSFFVLSMSDNGAQIYELMAQTVSDQRMWQCLITQCADAMKAKPRHSD
SAPAQTDAERDAIEIINGGMNRPSKESNGTTSSKFKFMFPGKDAISSPDTQAPPASIGPF
NGLKSEDEEEELAAAGRQEEEEEEDEELDEAELEAFLDGQLADRLPFLQQEGSRQGIAIE
SHELDELGVPPSKAEDALRTLAVLKQALFNHMLSREAEEEKGETEELKPSGAPGCQRGDS
LSGSHEGPSVTCDESQTSSGSPPDDSQLPSEHAGLSETTERNGGFMVLDFGAGSEESSTD
DDVVLEGDVGIDMRKLLSSSSQTGGGGPNLSRQLMTHLRLLQADLQHLKEVELKYNELRQ
THSDTTTDSDDNNDGTQ
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcacacagtccacactcactgacaggaccccaaacattctcaacaaggagccc
acagacaagaaggctaagaatgacaaatcccccgtctccctcaaacatgaatttgacccg
acaggtctcgtccagcgttgcgtgataatccagagagatgaaaatggcttcgggctgacg
gtgagcggagacaaccctgtgtttgtgcagctggtcaaagaagatggagctgctatgcga
gctggtgttcagacaggagaccggatcattaaggtcaacgggaccttagtcacacattca
aaccacatagaggttgtaaagctgatcaaatcgggctcctatgtggccctcacggtgctg
ggaaggcccccgggtctccctcagatccccctggaggaggacgagggtgagggtgacgaa
ggggccgagctcggttcaccctcgtctctctcggtgccgcactcacctttgctgtcaggt
gcggagccgtgcagcccccaggagcacagcgcctcccctctgcctgatggggatgagagc
aaaaccacacacagccacaagatggacagtttgcagaagatgctcaccaaacagcagctg
gacttggaggtgaaggaggaggagtgcggcagaaaccctcgaccgaagctggtgaaggag
atgcaggaggcgaagaagcagatctcgctgctgcaggagcagatcagcagaggtttacag
gctgtgtccaggagtggtgaggaggctgaggagggggacaacagtgggcccccgctgagg
gaacccacctcgtcctcgtggggggacggcgtcaacgacaggctccagatgaacagtcac
tctttgcacagcagtcccctcccagagggtcctgggaaaagagagacgccctgtcagagc
ccgaacatcggccggcgagacggactgaacctctactcgtcgcctgacgctgaggataac
actgacactgactccgttgcccagtgcattgtgggtagccctccctacctcctcaacccc
cagatcatcggagcagaagacgactactttgactctcagcaagagcagattaacggtcag
tgcagctgtttccagagcatcgacctgctgaagactcggccggctcacctcgctgtgttc
ctccatcatgttgtctcccagtttgacccttcacctctgttgtgttatctctacgctgac
atgcacaaacaaaccagctccaaagaaagtcgacgcttcttcatggagttccactcgctc
ttcatggaccgaacagcgaatctgaaacttccactgccggagacgattgcagctgaactg
gagaagcggaggctggagttaatcccagaggagctgtgtaaacagtacacgcagctgtta
caggactcgctgctgccggacctgcacaagaacctggacgacttcagacagaagcgcagt
atgggtctgactctggctgaggacgaactgtccaagctggacgtcgacggaggaaaagat
caacagggtttagagaaggaatgttcctgtgccgaacacatcatctccaagatagaggac
atcctgttgacgtcacagccgtcagaggaggagaagtgtcagacgatgcagtacgtgatt
ctcacctacatgaagcacctcggggtcaaagtgaaggagccgcgcggactcgaacataaa
cgagcacgaatcaacttcctgcccaagattaagaagagcatcaaacctgagagagaaggt
gaggagaaggtgaaaaagccccgattccccaacatcctcggtccgcccagacgcctgagc
agagtggattcaacgtcagtgggtaaagccgtggagctgagcaagcagcggtcaccaaag
ccgctctcccagccggccgtctgcatcccggagcagcccgacccctccgcctccacttct
tcctccggacggatccgtgggagtctgctcagcgagggatcggacgctggtctccatgtt
tcaccttccactacatcccagagtcacagctcgccctccgctcaggcctcggacaccagc
ggacaggactccgactccaatctgtctcctttccccgtccagcccagactgggcgagggt
ctgcagtgtggggaccagcaggagagcgtcgtcagtcccactcagttcgacttcagcccc
tccaacctggagcagctgcaggaggaagagcaggagacgttcaggatggaggtgccgagt
gcggcggccacttcaaccgacatccagagcgaggacgaccagggaggcgaggcggagtgc
gaggaggaccctctgaactggcaggctctggtcagccgcggcgtcctggagagtctgacg
ccgcaggagatcaaacggcaggaggtcatcaacgagctgttctacaccgagcgcgcccac
ctgcggatgctgaaggtgctggactgtgttttctaccagaggttgaacagagacggcgtc
ctcccccctgacgacatcaagcacatctttattaacctggaggagatcattcagctgcac
gtttccattacagaacaaatgacggccaccaggaagaggagcgagacgtcggtgatcggt
cagatcggagacgatcttctggcctggttcagcgaggacgaagaggagaagatcaaacga
gcggtgggaactttctgcagtaaccaaccttcggctctggagctcatcaagaacaaaaag
aagaaagaccagaggttcaacttgttcatgcaggaagccgagagcaaccgtctgtgtcgc
aggctgcagctcaaagacatcatccccgtagagatgcagagactgaccaagtacccgctg
ctactggacaacatcgccaagtacacagaggacggtgaggagagggagaaggtgaagaaa
gctggtgagtgttgtaaaaagatcctgaaccacgtcaaccaggctgtgaaggaggccgag
aacaaacagaggctggaggagtatcagaggaggttggatctctcgtctctcaaacagagt
gaaaaccccatgatcctggagctgaagaacctggacctgaccaagaggaagatggtgcac
gagggacctctctcctggaaagtcaataaagacaagaccatcgagctctacactattctg
ctggaggacattttggttttgctgcagaaacaggacgagcgtctgatcctcaagttccac
gggaagaatccggcgagcgttaccgacaccaagaacatcttcagccccatcatcaaactc
agcactgtactggttcgtcctgtggcaactgacaacaagtcgttcttcgtgctctccatg
tcggacaacggcgctcagatctacgagctgatggctcagaccgtgtccgatcagagaatg
tggcagtgtctcatcacgcagtgtgctgacgccatgaaggccaaacctcgccacagcgac
tcagctccagctcagaccgatgccgagcgtgacgccattgagatcatcaacggtgggatg
aacaggccgagcaaagagtccaacgggacaacgagctcaaaattcaaatttatgtttcca
ggaaaagatgccatctcttctccggacactcaagctccaccggcgagcatcggccccttt
aatggcttgaaatcagaggatgaggaggaggagctggctgcggccggccgacaggaggaa
gaggaggaggaggatgaagagctggacgaagcagaactagaggccttcctggacggacag
ctggccgacagactgcccttcctgcagcaggagggctcacgtcagggaatcgccattgaa
agccacgagctggacgagctcggcgttcccccgtccaaagctgaagacgctctcaggacg
ttggcggtgctgaagcaggctctcttcaaccacatgctgagccgggaggcagaggaggag
aaaggggagacggaggagttaaagcccagtggggcccccgggtgtcagcggggtgactcc
ctgtctgggagccacgaggggccgtctgtcacgtgtgacgagagccagacatcttcaggt
tcacccccagacgactcccagctcccgtctgaacacgcaggcctgtctgagacgaccgaa
cgcaacggtggttttatggtcctggacttcggcgcaggatccgaggagagcagcaccgac
gatgacgtggtattagaaggcgacgtggggatcgacatgaggaagctgctgtcctcctcc
tcgcagacagggggcggtggtcctaacctcagccggcagcttatgacccacctgcgcctc
ctacaggccgacctgcagcatctgaaggaggtggagctgaaatacaacgagctgcgacaa
acacacagtgacacaactactgactcggacgacaacaacgacgggacccagtga
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