Hippoglossus stenolepis (Pacific halibut): 118122427
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Entry
118122427 CDS
T08308
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03440
Homologous recombination
hsp03450
Non-homologous end-joining
hsp04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
118122427 (rad50)
03450 Non-homologous end-joining
118122427 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
118122427 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsp03032
]
118122427 (rad50)
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118122427 (rad50)
DNA replication proteins [BR:
hsp03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
118122427 (rad50)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
118122427 (rad50)
BRCA1-C complex
118122427 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
118122427 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SMC_N
AAA_15
SbcC_Walker_B
ABC_tran
AAA_29
zf-met
AAA_13
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
118122427
NCBI-ProteinID:
XP_035035031
LinkDB
All DBs
Position
15:16055470..16072592
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AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQLISFFTPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFSDVNGEKVSIHRSMSCTQKAKNYSFKSLEQVITR
TKDGEKVSMSSKCGELDREMISALGVSKSVLNNVIFCHQEESNWPLCEGKALKEKFDSIF
AATKYIKALETMRQLRLAQNHTVKECEVELRYLKQNKEKAAQIRETMDTKEAQLMASKDS
VEKIESKIDPLENRVIDIDTKLGKVMKLDNDIKALESRKKQMEEDNKELEETMEQVFQGS
DEQLQETYQNHQRTVKEKERRLTDCQKELERAGRECQRLNRIKADLLVEQGRLQLEADRH
TQNIRNRDTQVRSLASYLEMEGYDRPPFTTLQLESFHRQATQRLEQEKETASQVLADLQE
KEQQKQQSIDEIRDKKTGLERTVELKRDLQGKKQQELRNIRAELQRLEGSSTRLQVLENE
LAKAERELQSSMQSSNVEELKVEVVELQREKAELDRTQRRLDQEMETLNTHTSTRTQMEM
LKKDKTEKEDQVRKIKSRHSEDLVSLLGHFPNKKELEDWIYTKSKEINSTRDRLAKMNKD
LASSEQNKSHIASELRKKEQQLSSDEEKFFNVCGSQDLEQDLGKLQDDLEKISKQRAMLA
GATAVYTQFISQLTEETEPCCPVCQRTFPSEPDLQEVISDMQSKLRLVPDKLKNTEQDLK
RKERKKDEMMSLRPVRQSIVQFQEKELPELRNRLQTVNREIERLKGEVEEQETLRGTLMS
EEETAKACLQDISLMDRYLIDLKGVERNITQHGAKLQGVDLTRTTQQVSREKQETQHRID
TTSSKMELKRKLIQDQQDQIQTQKSAVNETKAEKLQLSSDMQKQQQLEEQCVEFTTEIKD
LTRDIREAKEQLCPLSAALEKLQQEKQELVERKRQRQEEGQEKINAIKERVKVITTLERD
ITKYVDGGKNEYKEQKESELQQTDTQLHDAEKQKEKISKEMGNTRQDIDTQKVQERWLQD
NLTLRKRVEELKEVVAKCETLMKDMGSMQVQQLRQERRDAERKLEDLKKNRSIALGRQKG
FEEEILHYKKELREDQYDKADERYKTKMIVMRTTELVIKDLDIYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSALVKRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSITSLSTYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatagacaagatgagcatcctgggggtgaggagctttgggatcgaggacaaa
gacaaacaattaatatcgttcttcactcctctgactgtgctggttggacccaatggagcg
gggaaaacgactattattgagtgccttaagtatgcaacatctggtgaacttccccctgga
tctaaaggaggggcttttgttcatgatcctaaggatgcccatgagacagatgtgcgagca
cagattcgcctcttattctcggatgttaatggagagaaagtgagcatccaccgctccatg
tcgtgcactcagaaggcgaagaactactccttcaaaagcttagagcaagtcatcaccaga
acgaaagacggtgagaaggtgagcatgtcgtctaagtgcggtgaactggaccgggagatg
atttccgccctgggtgtgtcaaagtctgtgctgaataatgtcatcttctgtcaccaagaa
gagtctaactggccgctttgcgagggaaaggcactcaaagaaaagtttgactctatcttc
gctgcgacaaagtatatcaaagctctggagaccatgcgtcagctgcgtctagcacagaac
cacacggtcaaggagtgtgaggtcgagctgcgctacctgaagcagaacaaggagaaggcc
gcgcagataagagagaccatggacaccaaggaggctcagctgatggcctctaaagacagc
gtagagaagatagagagcaagatagatccacttgagaatcgagtgatcgacattgacacg
aaattggggaaagtgatgaagctggacaacgacatcaaggctttagagagcaggaagaaa
caaatggaggaggacaacaaggagctggaggagacaatggaacaggtgtttcaaggctca
gacgagcagctgcaggagacttatcagaaccaccagaggacggtgaaggagaaggagcgg
cggctgacagactgccagaaggagctggagagagctggccgagagtgccagcgactaaac
cgaatcaaggctgatctcctggtagaacaaggtcgtcttcagctggaggctgaccggcac
actcagaacatcaggaaccgtgacactcaggttcgctctttggcgtcctatctggaaatg
gagggatacgaccgaccgcccttcacaactcttcagcttgagagttttcaccgtcaggcc
actcagagattggagcaggaaaaagagacagccagtcaggttttggcggacctgcaagaa
aaagagcagcagaagcaacagtccattgatgaaataagggacaagaagactggcctggag
agaacggtggagctgaagagggacctgcagggaaagaagcagcaggaactgaggaacatc
cgagcagagctgcagaggctggagggttcgtccactcggctgcaagtactggagaatgaa
ttggctaaagcagagcgtgagctgcagagctccatgcagagctccaacgtcgaggagctc
aaggtcgaggttgtggagctccagagagaaaaggccgagcttgatcgcacacagagacgg
ctcgaccaagaaatggagacgctcaacacacacacctcaacgcgcacgcaaatggagatg
ctgaaaaaagacaagacagaaaaggaggaccaggtacgtaagatcaagtctcgtcacagc
gaggatctggtgtcgctgctgggtcactttcccaacaagaaggagctggaagactggatc
tataccaagtcgaaagaaatcaacagcaccagggacagactcgccaaaatgaacaaggac
ctggcatcaagtgagcagaataaaagtcacattgcttctgagctgcgtaagaaggagcag
cagttatccagcgatgaagagaagttcttcaacgtgtgtggcagtcaggatctggagcag
gacctgggcaaactgcaggatgatctggagaagatatccaagcaaagagccatgctagct
ggggccacagcggtgtacacccagttcatcagccagctgacagaagagacggagccctgc
tgtcctgtgtgccagcggacgttcccatcagagcccgatctgcaggaggttatcagtgac
atgcagtccaaattacgcctggtgccagacaagctgaaaaacaccgagcaggacctgaag
aggaaggagaggaagaaggatgagatgatgtctctcaggcctgtcaggcagtccatcgta
cagtttcaggagaaggagttgcctgagttgagaaaccgtctgcagactgtgaacagagaa
atcgagaggctgaagggagaagtggaggagcaggagacgctgcgtggtaccctgatgtcg
gaggaggaaactgccaaggcctgcctgcaggacatatcgctcatggacagatacctgatt
gaccttaaaggggtggagaggaatataactcaacatggtgccaaactccagggagtagac
ctgaccaggaccacccagcaagttagtcgggagaaacaagaaactcagcacaggatagac
accacctccagcaagatggagctgaaacgtaaactgatccaggaccagcaggatcagatt
cagacgcagaaaagtgctgtgaatgaaacgaaagcagagaagctccagctgagcagcgat
atgcagaagcagcagcagctggaggagcagtgtgtcgagttcactaccgagataaaggac
ttaaccagggacatcagggaagcaaaggagcagctctgccctctgtctgctgctctagag
aagctgcagcaggagaagcaggagctggtggagcgcaagaggcagaggcaggaagaaggg
caggagaagatcaatgccattaaagagagagtgaaggtgatcaccaccttggaaagagac
atcaccaaatacgttgacggaggcaaaaatgaatacaaagagcaaaaagagtctgagctt
caacaaaccgacactcagctgcatgatgctgagaagcaaaaagagaagatcagtaaggag
atgggaaacacccgtcaggacatagacactcaaaaggtccaggagcgctggctgcaggac
aacctcaccttgaggaagcgtgtggaggagctgaaggaagttgtggccaaatgtgagact
cttatgaaagacatgggcagcatgcaggtccagcagctccgccaagaaagacgtgacgca
gaacgcaaactggaagacttgaagaagaaccgcagtattgcactgggtcgacagaaaggc
tttgaggaggagatactgcattacaaaaaagagctgcgggaggatcagtacgacaaagct
gatgagcgctacaaaaccaagatgatcgtaatgaggaccacagagctggtcattaaagac
ctggatatctactacaaggccctcgatcaaacaatcatgaaattccacagtatgaagatg
gatgagatcaacaagattatcagagacctatggcgcagcacctacaggggtcaagatatc
gagtacgtggagatccggtctgatgtggatgagaactcatctgctttagtgaagcggagg
gtttacaactacagagtagtgatggtgaaaggagacacagctttggatatgagaggacgc
tgcagtgctggtcaaaaggtgttggcgtccttgatcatccgtttagctctagcagagacc
ttttgtctaaactgtgggatcctggctctggatgagcccaccaccaacctggaccgggag
aacatcgagtcactggcacacgccctcgtagaaatcatcaagagtcgctctcgccagcgc
aacttccagctgctgatcatcacccacgacgaggactttgtggagctgctggggcgatcc
agctacattgaacacttctaccgcatccgcaagaaccaggaccagaactctgaaatcaca
aagtgcagcatcacctccctctccacgtatctccactga
DBGET
integrated database retrieval system
