Hippoglossus stenolepis (Pacific halibut): 118122506
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Entry
118122506 CDS
T08308
Symbol
uimc1
Name
(RefSeq) BRCA1-A complex subunit RAP80 isoform X1
KO
K20775
BRCA1-A complex subunit RAP80
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
118122506 (uimc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118122506 (uimc1)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
118122506 (uimc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAP80_UIM
Motif
Other DBs
NCBI-GeneID:
118122506
NCBI-ProteinID:
XP_047199565
LinkDB
All DBs
Position
15:complement(24128984..24139332)
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AA seq
1058 aa
AA seq
DB search
MRGGRGGHSSSSSLLSSSVSQEQNRMSVRKQIVQEATNVPTEIIIDDNTQELESGDDREG
KDELSSSLLSPPSARNSRRRERETQSQPKEMTEEEMMDLALRLSEQEASNTALQLQREEE
AMMKAIEESKQNRLRGSRFFNRHGPGSKRPLPSEPPLNMVGQTQPCPPSQSQSLLAHASL
RLCSRRKLLCSNGMRTPSIDQGASKDVCTPEIDLTQETKGAGDEIKNRNKKRKRKEGIPL
ETSDVSQKIDSQASPGSSQPLDSPQIDDSLLCKSPVFLSTDCRALVHVPRLSQDLLETCR
SSGFVLCSQDTCASPRTSLPALPKSPTFPRSPGNLTSCPKSPVSLQGDDEETQLTQSLEY
LRSPVFGRNSQRETTPSACKPLVSVCKNSGLEFSSSQESLTSSVRTTSCRAQSPVFPRSP
APPPPPERSPICGSPVFSETHRGAAEPSHGPSSSPVFGRSGREVSDDEPKTSVVPSEVER
SNREVSRAAGEESSQRPTQPCNPDPHQDDVRSNMITVSSLSEDSQELVETPEDLNAAETE
LTSDMTLVWSDKDEDVTPAGSPSPVFPEERAAGRAEVQVSSLNHDSAASPGAERRSSSAE
RQLQPVSSGGAGAPPAAGPTVQYYWGVPFCPRGLDPDAYTQVILAQMDVYDKSLKQAQRR
LLRKAPWGDAVLPQPERSPSPESSAESPQRLVPRRRGIRLRKKNQSQESPPAEAEEEGAE
QREGEEEEEAAKQKREGGEEGQMDTDDCDVCPETQLSNNDDDETQDMMIDAGAEPRPERP
DLPEVQMIPRDDPPAAVEPPPPQEGKEEMEVDAAVCGPKEGNVPVGGADAGRPHKKGEEE
KEDGVDPDVEETKVRGLQRPKSPEVEPGAAPPSPEACVDCPICQGSFPVTKIEWHAAYCD
GEVAVLDEREPGVSSKPRRKRRRAEVAEAEETNDSVSSSRNQEKCFICQKKFSLREYNRH
TELCLQRRTLKSETRGNLLSALEQTENRGSEAGPSGTRIQPEEVIDLRDDDDEEEDGVRA
LSISNSPIRSFTPISEATGCLIDFRRQQRAKKPSHRRR
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgagaggaggaagaggaggacactcttcatcatcatcattattatcttcatcagtctct
caggagcagaacagaatgtctgtgaggaaacaaatcgtccaggaggcgacgaacgtcccc
acggaaatcatcatcgacgacaacacacaggagctggagtctggggacgaccgggagggg
aaggacgagctctcgtcatcgcttctgtcgccgccatcagctcgaaacagtcgcaggaga
gagcgggaaacccaaagccaacccaaagagatgactgaggaggagatgatggacctggct
ctgcgtctgagcgaacaggaagccagcaacacggcgctccagctgcagcgggaagaggag
gccatgatgaaagccatcgaagagagcaaacaaaacaggcttcgtggatccaggtttttt
aaccgacacggacccggttccaaaaggccgctgccttcagaaccacccttaaatatggtc
ggccagactcagccgtgcccgccatcccagagtcaaagcctcctcgcccacgcctcgctc
agactctgctcccgacggaagctcctgtgctcaaatgggatgaggacgccgtccatcgac
cagggagcctccaaggacgtctgtacgccggagatagacctgacccaagaaacaaaagga
gctggagatgaaataaagaacaggaataaaaagcggaaaaggaaagaaggaattcctctc
gagacgtcagacgtttcccagaagatcgactctcaggcatcgcccggcagctcccagcct
ctggactcaccgcagatcgacgactctctgctctgtaaatcgcccgtcttcctgtccact
gactgcagggcgttggttcacgtcccgcggctcagtcaggacctgctggaaacctgcaga
agctcagggtttgtattgtgctctcaggacacttgtgcctcccctcggacgtctctgccc
gctctacccaagagcccgacgtttcccagaagccccggtaacctcacgtcttgtccgaag
agtcctgtctctctgcagggagacgatgaagaaacgcagcttacgcagagtctcgagtat
ttgagaagtcccgtgtttggcaggaactctcaacgtgagacgactccaagtgcctgcaaa
cctctcgtcagtgtctgtaaaaactcagggttggagttctcctcctctcaggagagttta
acctcctctgtgaggaccacttcctgtcgggctcagagccccgtcttcccaaggagcccg
gcccctccccctcccccagagagatcaccgatctgcggcagccccgtcttctcagagacg
caccgaggagccgctgagccgagtcacggcccttcttcgagtccggtgttcggcaggagt
ggacgagaggtcagtgatgacgagccgaagacgtctgtggttccttcagaggtcgaaagg
tcaaacagggaagtgagtcgagccgccggcgaggagtcttctcagaggccgacgcagccc
tgcaaccctgaccctcatcaggacgacgtcaggtcgaacatgatcaccgtgtcgtctctg
tcagaagattcacaggagctggttgaaacacctgaagacttgaacgcagcagagacggag
ctgaccagcgatatgacgctcgtctggtctgacaaggacgaggacgtcacgccggcaggt
tctccgagcccggtcttcccagaggagagagctgctggccgggcagaggttcaggtttcc
tccctgaaccacgactctgcagcttctccaggagcagagcggaggagcagctccgcagag
cgacagctccagcccgtcagcagcgggggggcgggtgctccgcctgcagccgggccgacg
gttcagtactactggggggttcccttctgtccccggggcctggacccagacgcctacact
caggtgatcctggctcagatggacgtttacgacaagagtctgaaacaggctcagcggcgt
ctgctgaggaaggcgccgtggggggacgccgtcctgccacagcctgagagatctccttca
cctgagtcgtctgctgagtctcctcaacgtcttgttcctcgaagacgaggtatcaggttg
aggaagaaaaaccagagtcaggagtctcctccagctgaggcagaggaggagggagcggag
cagagggaaggagaggaagaggaggaggcagcgaagcagaagagggagggaggagaagaa
ggacagatggatactgacgactgtgacgtttgtccagaaactcaactgagtaacaacgat
gacgatgaaacacaagatatgatgattgacgctggagcagagccccgccctgaacgtccg
gatctccctgaggtccagatgattcctcgagacgatcctccagctgcggtcgagccgccg
ccgccgcaggagggaaaggaggagatggaggtggacgccgcagtctgtggcccaaaggag
ggaaacgtccctgtcggcggcgctgatgctggacgtccacataagaaaggggaggaggaa
aaggaggacggcgtggatccagatgtggaggagacgaaggtcagagggctgcagaggccg
aagtctccagaagtggagcctggcgccgcccccccgagtcctgaagcctgcgtggactgt
cccatctgtcaggggtccttcccggtgacgaagatcgagtggcacgcggcgtactgcgac
ggagaggtggccgtgctggacgagagggagcccggagtgtcgtcgaagcctcgaaggaag
agacggagagcagaggtcgctgaagccgaggagacaaacgactccgtcagcagcagcagg
aaccaagagaaatgcttcatctgtcagaagaagttttctctgagagaatacaaccgacac
actgagctgtgcctccagcgccgaaccttgaagtctgaaaccagaggaaatctgctctca
gctctggaacaaacagaaaacagaggatcagaagccgggccgtcaggaaccagaatccag
ccggaagaggtcatcgacctgcgggacgacgacgatgaagaggaggacggcgtgcgagcg
ttgagcatcagcaactctcccatcagatccttcacccccatctcagaggccaccggctgc
ctcatcgacttcaggaggcagcagcgagccaagaagccgagccacagacggagatga
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