Hippoglossus stenolepis (Pacific halibut): 118122589
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Entry
118122589 CDS
T08308
Name
(RefSeq) roundabout homolog 1-like isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
118122589
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118122589
Cell adhesion molecules [BR:
hsp04515
]
Immunoglobulin superfamily
ROBO family
118122589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
V-set
fn3
C2-set_2
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
C2-set_3
Unc5_NetrinR_N
Ig_PDGFR_d4
Fn3_SaeA_3rd
Ig_J_second
Motif
Other DBs
NCBI-GeneID:
118122589
NCBI-ProteinID:
XP_047199604
LinkDB
All DBs
Position
15:complement(8241484..8325582)
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AA seq
1554 aa
AA seq
DB search
MPVRLWAVYCLLALLQICSGSRLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT
VEWYKDGERVETDRDNPRSHRMLLPSGSLFFLRIVHGRRSKPDDGSYVCVARNYLGQAIS
HNASLEVAILRDDFRQNPVDVMVAVGEPAVLECQPPRGHPEPTISWRKDGANLGDRDERI
TIRSGKLMITNTRKSDAGKYICVGTNMVGERESEIAELTVLERPTFVKRPSSVVVLADES
VEFPCVAQGDPVPTIRWRKDDSELPKGRFEILEDHTLIVRQVTSLDEGSYTCVVENMVGK
SETSATLTVHVNTVPPAFAIRPRNQVVTVGRTVTFQCEATGNPQPAIFWQREGSESLLFS
YQPPQPYSRLSVSQMGSLTITDVQHSDGGFYSCQALNIAGSVITKALLEVTDSGSDHPPP
VIRQGPINQTVPMDSSVVLGCKTAGPPSPTVHWKKDGKLLSPLDSRMSATDTGSLEIRSA
KLGDTGFYTCVASSPNGEASWTAYLQVEEFGVQSTHQTDPDLIPSTPSKPEVTDISRTSV
TLLWKTIPGAGAAPTSHLIEAFSDTLGSRWVTLAEHVKTQSFVLRNLKPGAVYLFMVRAV
NAYGLSDPSPISDAVRTQDSASTMQGVDHRHIQRELGDVVIHMHTPTVLSSSAVRLQWMV
EQQSPYTQGYKVLYRASAEHGQPEGQWSFQEVRAPREDGVVISQLKRGSIYEFKVRPFFD
EFQGADSEVKVVRTLEEAPGRAPQGVTVTKSGTDGTSILITWKPPPHPEEAGVIQEYKIW
CLGNESRYHVNQSVDGSTFSVLISSLSPGIRYSVEVAASNSAGPGVKSDVTFFQLDSAGQ
MMDISVERDTFSHISDVVRQPAFIGGIGATCWLILMIFSVWLYRHRKKRSGLSSTYTGIR
KVPSFTFTPAVAYQRGESVCSAGRPGLLSMGEPLNQLWLPDNWPNACANHKDCSINCCNN
GNGTSDSNMTTYSRPADCIANYGNHPDNKQLASDTAIYCDVDLSNKLNEIKTFNNSSLSY
TSPGEDSSATYEPIPYATTQLIQASIKNKASSGGAIAEPLDMACWKQPPNPPPIPKEMVA
HMQYHVIEQNLLNKEHLQGNEGMIHPKSIAYSQSRDHSTGGSHHSSDRGSNSTSGSQNQK
KGTRAPKIPKHNVVSWGEALSPPPLPHVNAWDCDEYSLPMERSFDTEGRIESCPTPPVRG
AVSSPAEVSYSHPPSASLQGDLSTDLHNGNKHLSQHTSSHPCHLSPTHTYSSIPPCLEAD
EQEEEEEEEEAEEEADAELADSRHNGQRHKHQLHHPSPHKLLFHGLDQTPASSTGDLDKS
VTGSMVNSWGSASEDNISSGRSSVVSTSEGSFFTDGDFNQAAASSRDIVGLRMCRYPDES
GRRPQRPSSPMSTDSNMSPAITHKRPRRHKQNQCGQQGYQPKDVFNDDSCMPLSFSSQMS
HGEYKVRGATLPRMGSGDAGGRRGSTGTHRVREGTAEPRDNQDKHKTPLGGKGSSRSRQH
SEFGDVLLYSRPSFPSGPALREPEDPNSSTFMSCGDSRTKQGGQVGEDQEFLQS
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtccgtctgtgggcagtttactgtctactggcactgctgcagatttgttcaggt
tctcgtcttcgccaggaagacttccctcctcgcatcgtggagcacccctctgacctcatt
gtatccaaaggggaacccgccaccctcaactgtaaggccgagggccggccaacccccacg
gtggaatggtacaaagatggggagcgcgtcgagacggaccgtgacaacccccgatcgcac
cgcatgctgctgcccagcgggtcgctcttcttcctacgcattgtccacggacggcggagc
aagcccgacgacggcagctacgtgtgcgtggcccgaaactatctgggccaggcgatcagc
cacaatgcgtcactggaagtagccattttacgtgacgacttccgacagaaccctgtggat
gttatggttgcggtgggggagcccgcagtgctggagtgccaaccgccccgtgggcaccct
gaacccaccatctcctggagaaaggacggggccaatttaggcgacagagacgaacgcatc
acaatccgcagtggcaagctgatgatcaccaacaccaggaagagcgatgcggggaaatac
atctgcgtaggaaccaacatggtgggggagagggagagcgagatcgccgagctcaccgtg
ctggagcgcccaacctttgtaaagcggcccagcagtgtggtggtgttggcagacgagagc
gtagagttcccttgcgtggctcaaggagaccccgttcccactatccgctggaggaaggat
gattctgagctgcctaagggcagatttgaaatcctagaggaccacaccttgatcgttcgc
caagtgacatccttggatgagggctcgtacacgtgcgtggtggagaacatggttgggaag
tcggagacgtccgccacgctcactgtacacgtcaacaccgtgcccccagcatttgccata
cgccccaggaaccaggtggtgacggtgggcaggacggtcaccttccagtgcgaggccacc
ggcaacccgcagccagccatcttctggcagagggaaggcagcgagagtctcctgttctcc
taccagccgccgcagccctacagccgcctgtctgtctcccagatgggcagtttgaccatt
actgatgttcagcactcggatggcggcttctacagctgccaggctctcaacatcgctggc
agtgttattaccaaagcactgctggaggtcacagactctgggtcagaccaccctcctcct
gtgataaggcagggacccatcaaccagaccgttcctatggacagctcggtcgtcctcggg
tgcaagaccgctggtcctccgtctcccacagtccactggaagaaggatggtaagctgctg
tctccattggactcccgcatgtccgcaacagacacaggatcactggagattcgctctgct
aagctgggagacacaggcttctacacttgtgtggcttctagtccaaatggagaggcttcc
tggacagcatacctgcaagtggaagagtttggagtccagtccactcatcaaacagaccct
gacctgatccccagcacgccgtccaaacctgaggtgaccgacatcagccgcacatccgtc
accctgttgtggaaaaccatccccggtgccggtgcagcacctacatctcatctaatcgag
gcattcagtgatacgttaggcagccgatgggtgaccctggccgagcatgtgaagacacag
agctttgttctgaggaacctgaagcctggagctgtctacctcttcatggtcagagcggtg
aatgcttacggcctcagtgaccccagtccgatctcagacgctgtcagaacacaggacagc
gcttccaccatgcagggggtggatcatcgtcacatccagagggagctgggagatgtagtc
atccacatgcacacgcccaccgtcctgtcatcttctgctgtccggctgcagtggatggtc
gagcagcagtccccgtacacccagggctacaaggtgctgtaccgggcgtctgccgagcac
ggtcagcctgaggggcagtggagcttccaggaggtgcgcgcccctcgggaggacggtgtg
gtgatcagtcagctgaagcgaggatccatctatgagttcaaagtgcgtcccttttttgac
gagttccagggagctgacagtgaggtcaaggtggttaggacattggaagaagctcctggt
agagccccccagggtgtcacagtgacaaagagtggcacagatggaacttccatcctcatc
acttggaagccgcctccacacccagaggaggcaggagtcattcaggagtacaagatctgg
tgcctgggtaatgagagtcgctaccatgtgaaccagtcggtcgacggctccaccttctcc
gtgctcatttccagtctgtcaccgggaattcgctacagtgtggaggtcgcagccagcaac
agtgcagggcctggggtcaaaagtgacgtcactttctttcaattagactctgcgggccag
atgatggacatcagcgtggaaagagacacattttctcacatctcagatgtcgtgaggcag
ccggcgtttattggtggcattggcgccacctgctggttgatcctcatgatcttcagcgtc
tggctctaccggcacagaaagaagagaagtggcctgagcagcacgtacaccggcatccgc
aaggtcccatcattcacctttacacctgcagttgcgtatcaaagaggggaatctgtgtgc
agtgctggcagacctggcctcctcagcatgggggagcctctcaaccagctgtggctgcca
gacaattggccgaacgcatgtgccaatcacaaggactgcagcatcaactgctgcaataat
ggcaacggcaccagtgacagcaacatgacaacatacagccgaccagctgactgcatcgcc
aactacggaaaccatccagacaacaaacagcttgcttctgacacagccatttactgtgac
gtggacctctccaacaagctcaatgagattaaaaccttcaacaactcgagcttgagttac
acgagtcccggagaggattcgtccgccacatatgagcccatcccgtacgccaccacgcag
cttattcaagccagcatcaagaacaaagcctcgtctggtggcgctatagcagagcctctg
gacatggcctgctggaaacagccccccaacccgcctccgataccgaaggagatggtggca
cacatgcagtaccacgtaattgagcaaaacttgctgaataaagaacacctgcaaggaaat
gaaggaatgatccatcccaaaagcatcgcctacagccagagccgtgatcacagcacagga
ggctcgcaccacagctcagacagaggcagcaacagcacctcagggagtcagaatcaaaag
aaagggacgcgggcaccaaagatcccaaaacataatgtggtgagctggggagaagccctt
tctcctcctcctcttcctcatgttaatgcctgggactgtgacgagtacagcctacccatg
gagaggagttttgacacagagggaagaatagaaagctgccctactccaccagttagaggg
gcggtgtcttctcctgctgaagtgtcctatagtcacccaccttccgcatcactgcaggga
gacctgagcactgacctgcacaacggaaacaaacacctgagccaacacaccagcagccac
ccttgccatctctccccaacgcacacctacagctccatacccccctgcttggaagccgac
gaacaggaagaggaagaggaagaggaggaggcagaggaggaggcggacgcggagctcgct
gacagtcgccacaacgggcagaggcacaagcaccagctgcaccacccctctccacacaag
ctgctcttccacgggctggaccagaccccagcctccagcaccggggatctggacaaatcc
gtcacggggtccatggtgaacagctggggctcagcgtctgaggacaacatctcatcgggc
aggtccagtgttgtcagcacttcagaaggatccttcttcacagacggtgacttcaaccag
gctgcagcctcttcacgggatatcgtaggcctgcgcatgtgtagatacccagatgagtca
ggccggcggccccagcgtcccagcagccccatgtccacagacagcaacatgagtcccgca
ataacacataaaaggcccaggaggcataaacagaaccagtgtggtcagcagggctaccaa
cccaaagacgtcttcaacgatgactcctgcatgcctctgagtttctccagccagatgtcc
catggcgaatataaagtgaggggggccacgctgccccggatgggctctggggatgccggg
ggtcgacgaggcagcacggggactcacagggtgagggagggtacggctgagccgagagat
aaccaggacaagcacaagactccgctgggaggaaaaggaagtagcagaagccgacagcac
tcagaattcggggacgtccttctatacagtcgcccctctttcccatcaggcccagctctg
agggagcccgaggatcccaattcatccaccttcatgtcgtgtggagactcaaggaccaaa
cagggaggacaggtgggagaggatcaagagttcctgcaaagctaa
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integrated database retrieval system
