Hippoglossus stenolepis (Pacific halibut): 118122797
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Entry
118122797 CDS
T08308
Symbol
grin2ca
Name
(RefSeq) glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04020
Calcium signaling pathway
hsp04080
Neuroactive ligand-receptor interaction
hsp04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
118122797 (grin2ca)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
118122797 (grin2ca)
04082 Neuroactive ligand signaling
118122797 (grin2ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118122797 (grin2ca)
Ion channels [BR:
hsp04040
]
Ligand-gated channels
Glutamate (ionotropic)
118122797 (grin2ca)
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
NMDAR2_C
ANF_receptor
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
118122797
NCBI-ProteinID:
XP_035035551
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All DBs
Position
16:18716864..18790695
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AA seq
1413 aa
AA seq
DB search
MGFRLGCLSDSPWWPPPLLLLLFCTIPCCSGRPFGIPTPSVNVAVVFSGSAYQTEIKGRL
SRENFLDLPLEVNPITVLVNNTNPRALLTRICDTLSTNRVHGVVFEDNVGSEAVAQILDF
ISTQTAVPIVGISGGSAVVLPYKGEGSNFLQLGSSIEQQVNGMFKVMEEYNWDSFVVITS
LYPGYEAYVDYVKTFRDTSYFIWELQDVLTFDMSADGMNDIRALRLLQQIDAQVLLVYCS
HEEAQYLFSMAAGAGLDGPGYIWIIPSLAVGNPDIAPPESFPVGLISIITDRWRMSLRKR
VRDGVAIVVKGVQSFRKQRGFIPEGHSDCHNPVKPLPANDTLFRHMLNVTWEHNDFSFNN
NGYLVNPAMIIITLDRERQWDKVGAYEMGILQMRYPVWPRFGSYLEPVSDYRHLTVATLE
ERPFVIVEAVDPSTGTCVSNTVPCRRQSNKTETIVGHTEPYKKLCCKGFCIDILKKLSRT
IKFSYDLYLVTNGKHGKLVRGIWNGMIGEVFYKRADMAIGSLTINEERSEIIDFSVPFVE
TGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAITVFVFEYCSPVGYNRSLVS
AKEPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANLA
AFMIQEQYIDTVSGLSDKKFQKPQEQYPPFRFGTVPNGSTERNIRSNYPEMHSHMVKYNQ
KGVEDALNSLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDSR
WKRPIDLALLQFLADGDTQKLQTVWLTGICRNEKKEVMSSKLDIDNMAGVFYMLLVAMGL
SLLVFAWEHLLYWKLRHSVRQSERLDFLLAISRGIYSCFSGVEHTDHNGSMQSPDITTNY
SQANMLKMLQTAKDMVSSARVENSLDNATKTIENWSRRGADNVRAGLPPRVTATDMTCSR
LPYISSITDNHSPYPQRALTPTFPIHYGDSSTQPLLEKPRVVTRPTPLRYTLPARSSQHV
LERTLPISSLSSPHIAMRDPAPSGTANPYHSSRLYVENQPRYPTSPFVPYREFQVPDIYV
EHKGPLRRKFSYPPDCVSRRRRSHSYVFDAADPRVRGDYDEPRPCLAELRANHLLNNHAP
DAAAISCTARHYPGSSTSCNSCMKSYLEPEMDDVPLLGKDKLNRRASFLRATWGNDRIHQ
VDETKPSTSTSPSTRVDMPDLFPRVVVANPKPHKLYSSLGHNLSCYPLAAEPAYLDPAHM
GSYPYKQKLKYADSTRLPSYREAILQNAAALRRSSSTVVHRHYSTYLNSYTDLPVYVGPL
AQGPSQLYDGSKDMCHMFPCTSHCPENAAMLPRMSDRQVVYHNNMFGAYDGTGKREDPGI
GSRERRQVLVARRVNSPYVPKPWGRVSSLESEV
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgggctttcgtctaggctgcttgagcgactccccgtggtggccaccaccgctgctgctg
ctgctgttctgcactatcccctgctgttcaggccggccgtttgggattccaacgccctcc
gtgaacgtggcggtggtgttcagcggctcggcctaccagacggagattaaggggcggcta
agccgggaaaatttcttggacctgcctctggaggtgaaccccatcactgtgctggtcaat
aacaccaaccctcgggcgctgctcacccgcatctgtgacaccctctccaccaaccgtgtg
catggcgtggtgtttgaggacaatgttggctctgaggctgtggcacagatcttggacttc
atctccactcagacagctgtgcccattgtgggcattagcggaggctctgctgtcgtcctg
ccatacaagggcgaaggctctaacttcctgcagctgggctcctccatcgagcagcaggtc
aacggtatgttcaaggtgatggaggaatacaactgggacagctttgtggtcataaccagc
ctctacccaggctacgaagcctacgtggattacgtcaagaccttcagggacaccagctac
ttcatatgggaactgcaggacgtgctgaccttcgacatgtccgccgacggcatgaatgac
atccgagcactcaggctgctgcagcagatcgatgcccaggtgttgttggtctactgctca
cacgaagaggcccagtacctgttttccatggcagccggggctggactggacgggccaggc
tacatctggattatccccagcctggccgtgggaaacccagacatcgccccaccggagagc
ttccccgtggggcttatcagcatcatcacagaccgctggagaatgagccttaggaagagg
gtacgagacggggtggccatcgtggtgaaaggcgtgcagagctttcggaagcagaggggc
ttcattcccgagggccacagtgactgccacaaccctgtcaagccattgcctgctaacgac
acgctgttcaggcacatgttgaatgtaacctgggagcacaatgacttctccttcaacaat
aacggttacctggtgaatccagccatgatcatcatcactctggacagagagcgacagtgg
gataaggtgggggcctacgagatgggcatcctgcagatgcgataccccgtgtggccgcgg
tttggctcctacctggagccagtgtcggattacaggcacctgacggtggccacgctggag
gaacggcccttcgtcattgtggaggcagtggacccttcgactggtacatgtgtgagcaac
actgtgccctgccgacggcagtccaacaaaacggagactattgtgggtcacaccgagccg
tacaaaaaactgtgctgtaagggcttctgcatagacatcctgaagaagctgtcccgcacc
ataaagttctcctatgacctctacctggtcaccaacggcaagcacggcaaactggtccga
ggcatttggaacgggatgatcggagaggtgttctacaagcgggcggacatggccatcggc
tcgctgaccattaacgaggagcgctctgagatcatcgacttctcagtgccgtttgtggag
acaggaatcagcgtgatggttgccagaagtaatgggacggtctcaccatctgccttttta
gaaccatacagtccggcggtttgggtgatgatgttcgtcatgtgtctcaccgttgtggcc
atcacagtgtttgtgtttgaatactgcagtccagttgggtacaaccgcagcctggtcagt
gccaaagaacccggaggtcccaccttcacgattgggaagtcagtgtggctgctgtgggga
atcgtcttcaacaactcggtgccaattgagaatccaaagggcaccaccagtaagatcatg
gtcctggtctgggctttctttgccgtaatcttcctggcttcctacacagccaacctggca
gccttcatgatccaagagcaatacatcgacactgtctctggactgagtgacaaaaagttt
caaaagccacaggagcagtaccctccattccgctttggtacggtcccaaatggcagcaca
gagcgtaacataaggagtaactaccccgagatgcactcccacatggtcaaatacaaccag
aagggagtagaggatgcccttaacagtctcaaaacagggaaactggatgcctttatctat
gacgctgcggtgctgaattacatggctggcaaagatgagggctgcaagctggtgaccatt
ggcagtggcaaagtgtttgctactactggttacggcatcgccctgcagaaggattcccgc
tggaaacgacccatcgacctggctctgctccagttcttggctgatggtgacacacagaag
ctccagaccgtctggctcacaggcatctgccgcaatgagaagaaagaggtgatgagcagt
aagctggacattgacaacatggcgggggtcttctacatgctcctggtggccatgggcctg
agtctgctggtttttgcgtgggaacacctgctgtactggaaactacgtcattcagtccgc
caatccgaacggctcgacttcctcctggctatcagcagaggcatctacagctgcttcagt
ggagtagagcacactgaccacaatggaagcatgcagagtcccgacatcaccaccaactat
tcacaagccaatatgctaaagatgctacagacagcgaaggacatggtgtcctctgccaga
gtggagaactctctagacaacgctaccaaaacaatagagaactggagcaggcggggggcc
gacaatgtgcgggctggccttccacccagagtgacagccaccgacatgacctgcagccgt
ctaccctacatctccagcatcactgacaaccactcaccatacccccagagggccctcaca
cccacgttcccaattcattatggggacagctccacccagcccctcctcgaaaagccccgc
gtggtgactcggcccaccccactccgctacacactacctgcgcgcagcagtcagcacgtc
ttagagaggactctgcccatctccagcctcagcagtcctcacatcgcaatgagggaccct
gctccctccggtacagctaacccctaccacagcagcaggctgtatgtggagaaccagccc
cgctacccaacgtccccttttgttccttacagggagtttcaggtccccgatatctacgtg
gagcacaaagggccactgaggaggaagtttagctaccctcctgactgtgtgagccgcagg
aggaggtcccatagctacgtgtttgatgctgcagaccccagagtgagaggtgactatgat
gaacctcgtccctgccttgctgaattaagggccaatcacctcctgaacaaccatgcccct
gatgctgctgccatttcctgcactgcaagacactatcctggcagcagcaccagctgcaac
tcctgtatgaagtcttatctggagcccgaaatggatgatgtcccactcctggggaaggac
aaactcaaccgccgcgcctcatttctcagagccacatggggcaacgacaggatccatcag
gtggatgaaacaaagccctcaacatccacatctccctccacccgcgtagacatgcctgac
ctgtttccacgggtggttgtggccaacccaaaaccccacaagctatacagcagtctcggg
cacaacctgtcctgctaccccttggctgctgagcctgcgtacttggaccctgcccacatg
gggtcctatccctacaagcaaaagctcaagtacgctgactccactcggctgccctcatac
agggaagccatcttgcagaatgccgctgccctgcgccgctcctcctccacagtggtgcac
agacactactcaacctacctgaactcatacacagacttaccagtgtatgtggggccactg
gcccagggaccatcccagttgtatgatggttccaaggacatgtgccacatgtttccttgt
acaagccactgccctgaaaatgcagcaatgctgcctcgtatgagtgacagacaggtggtt
taccacaacaatatgtttggggcctatgatggcacaggaaagagagaggacccaggtatt
gggagcagagagcggaggcaggtgctggtggcgcggagagttaacagtccctatgtgcca
aagccctggggcagggtatccagcctggagtcggaggtctga
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