Hippoglossus stenolepis (Pacific halibut): 118123054
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Entry
118123054 CDS
T08308
Name
(RefSeq) RNA exonuclease 5 isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
118123054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hsp03009
]
118123054
Ribosome biogenesis [BR:
hsp03009
]
Eukaryotic type
Pre-60S particles
RNases
118123054
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RNase_T
Motif
Other DBs
NCBI-GeneID:
118123054
NCBI-ProteinID:
XP_035036033
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Position
2:23980519..23987237
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AA seq
810 aa
AA seq
DB search
MHKRSVSRRVNLTMKMEPSSAATSCREKRRNVSSTAHDTAKRLKSEQEGAVAPPLCPPRI
SVPLDRLQQPITLTELTELLHYAALGKTGGIQQPSWCRLHHQRKVKGVNVVVVEGLTQSH
FYKHYLTLRRLRTNYSSRITFTPPSQNVASGIFSNEVPKSDDPSLSKTHMDNSQIPKAVK
FHPVISKFGTRTRGLTAYLLSQEEMIQKNYPVKGMPGFEEFVCTDSVECATDSSPLYGLD
CEMCLTEKGNELTRVSLVDSDGNCVLDDLVKPETRILNYLTMFSGVTAAMLRPVTTTLRD
VQAKLRALLPRDAVLVGHSINSDLGALKLIHRHLIDTALLYRKEFGQKFKLKILAENILK
RQIQTEEKKGHHPTEDAVAALELAQYFIKTGPRQVVEHHLEELWGYTIEEEIIELPAPTP
SHRFADILQTLGRSVAFIGKRSDVALDLSHQQWHNSDKEVLASFRRRAECPFLSVLRLSS
LSDHLKRCVPHREQQYQRVCANLRDMCVVFAGPFPAGFSEKEAKRLFRRCGPVRKIKLLN
TSVRVHAEVEFELLEGATLALKTLNGLSLQGQSIKVQRPVYESMLDVDLTLDALAHDALD
TSHLYAVKSKPSVTERINNSAMINGNTLDAKCPGAACVKTANGLHSAKGNDKRLQLETEL
SEETLTETFGHFGAVERILLPAKAGKHTRHAYIKFESPEVKHAALSSSDDPRTEDYVICP
SLTPPHLRSWAALTTSTVDTEGEDEGSGHMHVSSQDQEIELVVGKLDRCLGKLFRSLPEC
TLSVVVLLGHDSADDPHPGLCFMEIKSGSR
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgcacaagaggagtgtttcaagaagagtaaacctcaccatgaaaatggagccttcatca
gcagctacgagctgcagagagaagagaaggaacgtctcctccacagctcacgacacggcc
aagagattaaaaagtgagcaggaaggagcggtggcacctccactctgtccgccgaggatc
tctgtgccgctcgaccgcctccaacaaccaattacactgactgagctgacagagctgctg
cactacgccgctctggggaaaacaggtggcatccaacaacccagttggtgtcgtctccac
caccagaggaaggttaaaggtgtgaatgttgtagtcgtggagggtctgacccagagtcac
ttttacaaacactacctcacgctgcgacgcctcagaaccaactatagctctaggatcacc
ttcactccaccatctcagaacgtggcatctggaatcttcagcaatgaggttcctaagtca
gacgatccatcactttcaaaaacacacatggacaacagtcaaatacccaaagccgtgaag
tttcacccagtaatcagcaagtttgggacacggaccagaggactgacagcgtatctactg
agccaggaggagatgatccagaagaactacccggtcaaaggaatgcctgggtttgaggag
tttgtgtgcacggacagtgttgagtgtgcgactgacagcagccctctgtatggactcgac
tgtgaaatgtgtctgacggaaaagggaaacgagctgactcgtgtctctctggtggacagt
gatggaaactgtgttctggacgatctggtgaaacctgagacccgcatcctcaactacctg
acaatgttctctggtgtcaccgcagcaatgttgcgaccagtcacaaccaccctgagggac
gttcaggcgaagctcagggcgctgttgccgcgggacgccgttctggtgggacattccatt
aactccgacctcggggctctgaaactgatccaccggcatttaatcgacacggccctgctg
tacaggaaagagtttggacagaagtttaagctcaagatcttggccgagaatattctgaag
aggcaaatacaaaccgaagagaagaagggtcatcatcccactgaggatgctgtggcagcc
ctggagctggcccaatactttattaaaacaggacctcgtcaggttgtggagcatcacctg
gaggagctgtggggatacacaatagaggaggaaatcatagagctgcctgcacccacaccg
agtcacaggtttgcagacatattacagaccctcggccggtcagttgccttcatagggaag
cgttctgacgtcgctctggatttgtcccatcagcagtggcacaactctgacaaagaggtg
ttggcctctttcaggagacgggccgagtgtccgttcctctcagtgctccggttgtcttcc
ctctcagaccacctgaagcgctgtgttcctcaccgggagcagcagtaccagagggtgtgt
gcaaaccttcgtgacatgtgcgtagtcttcgctgggccgtttccggcaggtttctctgag
aaggaggcgaagcggctttttcgtcgctgcggaccagttcggaaaatcaaactgctgaac
acaagcgtaagagtccatgcagaggtagagttcgagctgctggagggagcgacgctcgct
ttaaaaactttaaatgggctcagtttgcagggacagtccatcaaggtgcagaggcctgtt
tacgagtcgatgctggacgtggatctgactcttgacgctttggcgcatgacgccctcgac
accagtcacctctacgctgttaaatcaaagcccagtgtgactgagcgcataaacaattct
gcaatgatcaacggaaacacattagatgcaaaatgtccaggtgcagcttgtgttaaaact
gcaaatgggttacactctgctaaagggaacgataaacggctgcagctggagaccgaactg
tctgaggaaacactcacagagacgttcggtcactttggagccgtggagagaatcctcctt
cctgccaaagccggaaaacatacaagacacgcgtacataaagtttgagagtccagaggtc
aaacacgcagccctcagctcctctgatgatccccgcacggaggactacgtcatctgtccg
tccctgactccgccccacttgcgctcatgggccgccctgacaacaagtacagtggatact
gagggggaagacgaggggagtggccatatgcacgtcagttctcaggaccaggagattgag
ctcgtggtggggaagctggaccgatgcctggggaagctctttagaagtctcccagaatgc
accttgtctgtggtcgtgctgcttggacacgacagtgctgacgacccgcatcctggtttg
tgcttcatggagattaaatctgggtccaggtga
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