Hippoglossus stenolepis (Pacific halibut): 118123074
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Entry
118123074 CDS
T08308
Symbol
aplf
Name
(RefSeq) aprataxin and PNK-like factor isoform X1
KO
K13295
aprataxin and PNK-like factor [EC:3.1.-.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118123074 (aplf)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
118123074 (aplf)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
118123074 (aplf)
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Paralog
GFIT
Motif
Pfam:
zf-CCHH
FHA
FHA_2
Motif
Other DBs
NCBI-GeneID:
118123074
NCBI-ProteinID:
XP_035036082
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All DBs
Position
2:31192037..31202213
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AA seq
497 aa
AA seq
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MRCCVPEVLVPPEECWIASSDPVTRAEADHMSGFDLVPVDGGAPVHLPPGETVLGRGPLL
GSQVSDQRVSRRHGLLQNLSGQLQIKPMHVNPCFIQSSLTDDPRPLRRGSWFPLQDGDLL
SLLPGQFIYKVLAVGAGEHTPRNSQTFEEEKKEEEERPTSPEPDVEPPRPIRLGRGQTPP
HEEPTSAALSNEEEEEEEEGPRRLHQEDFTLPKEEEDDRCAVPVMKKRVLPAWMTAAVAP
ISSSSPKVQSSVKRSKAPKLTTPTVAHSPEEAGLSEEGEEHPRKRRRKDVATVRHQRGSS
STETSGESDSVAMEVGEEGKGGETSTAVTTATTQAPDVTESKEEDRKSKEEQGTKRSSSV
SARLRTPCPFGKDCYRKNPVHFQECSHPGDSDFEEEEEENEEEVDRPECPYGTDCYRKNP
LHRKEYKHTKRAARSQTVPMKSPVDDEDEDEYDDSFIDDDSEDVGQDSDYIPPDSDDSSK
EDVRLQKEAQVFLKRRK
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgcgctgctgcgtcccggaagtgttggtgccgccggaggagtgttggatcgcctccagt
gacccagtgacccgggcggaagctgaccacatgtccggcttcgacctggtcccggtggac
ggcggggccccggtgcacctgccgccgggggagacggtgctgggcaggggccccttactg
ggatcccaggtcagtgatcagagagtgtccagacgtcacgggctgctgcagaacctgagc
ggtcagctgcagatcaaacctatgcacgtgaacccgtgcttcattcagtcgtccctcact
gacgaccctcgacctctgagaagaggttcctggttccctcttcaggacggagacttgttg
tctctgctgccggggcagttcatctacaaggtgctggctgtgggcgcaggagagcacact
cccagaaacagtcagacgtttgaagaagaaaaaaaagaagaggaggaacgtcccacttct
cctgagccagatgtggagccgcctcgtccaatcagactcggccgtggacagactccgcct
cacgaggagccaacgtcggcagctctgtccaatgaggaggaggaggaggaggaggagggt
cccagacgtttacatcaggaagacttcacgcttccaaaggaagaggaggatgatcgctgt
gctgtgcctgtgatgaagaagagagttttacctgcgtggatgacggcagctgtcgctccc
atttcgtcctccagtcccaaagttcagtcgtccgttaagagaagtaaagcacccaaattg
accacgcccactgtagcccactcaccggaggaggcggggcttagtgaggagggggaggag
catcctaggaagaggaggaggaaggatgttgccacagtccgtcatcagcgtggctccagc
agcactgagaccagcggcgagtctgacagcgtcgccatggaggtgggagaggagggaaaa
ggaggagagacatccacggcggtcaccaccgccacgacacaggcacctgacgtcactgaa
tccaaggaggaggacaggaagtcgaaagaagaacaggggactaaacgatcctcgtctgtc
tctgctcggctcagaacgccgtgtccattcgggaaggactgctacaggaagaaccccgtt
catttccaggagtgcagtcaccccggtgacagtgacttcgaggaggaggaggaggagaac
gaggaggaggtggaccgacccgagtgcccctacggcacagactgctacaggaaaaatcct
cttcacaggaaagaatacaaacacacaaagagagcagctcgatcacaaactgtccccatg
aagagcccagtcgatgacgaagatgaagacgagtacgacgacagcttcatcgacgacgac
agcgaagacgtgggccaagactcagactacatccctccggactcggatgacagcagcaaa
gaggacgtcagactgcagaaagaagctcaggtgtttctgaagaggaggaagtag
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