KEGG   Hippoglossus stenolepis (Pacific halibut): 118123118
Entry
118123118         CDS       T08308                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
hsp  Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:hsp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hsp03041]
    118123118
Spliceosome [BR:hsp03041]
 Complex B
  Other components
   Complex B specific factors
    118123118
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 EIF3I ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st LisH_TPL WDR90_beta-prop_4th NBCH_WD40 Beta-prop_Nup120_160 Beta-prop_HPS5 Beta-prop_TEP1_C Beta-prop_NWD2_C WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Ge1_WD40 Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_WDR75_2nd Beta-prop_VPS8 Mala_s_1-like Beta-prop_IP5PC_F Cytochrom_D1 TFIIIC_delta VPS8_N PROPPIN WD40_like DUF7165
Other DBs
NCBI-GeneID: 118123118
NCBI-ProteinID: XP_035036152
LinkDB
Position
2:complement(19067758..19075301)
AA seq 512 aa
MAVEMEPSDVIRLIMQYLKENNLYRTLTTLQEETTVSLNTVESIDSFIADINRGHWDSVL
LAIESLKLPDNTLIDLYEQVVMELIEMREVGAARSLLRQTDPMIMLKQTQPERYVHLENL
LSCSYFDPREAYPKGSSKEKRRRAIAEALVREVSVVPPSRLMGLLEQVGSLRLQQLPGHL
SPESPIDTSGNKERHVVKESFPTQLYRHIKFGRRSHVECACFSPDGKYLITGSVDGFIEV
WNFYTGKISKDLKYQAQDSFMMMDDAVLCMCFGQDTDLLATGSQNGKIKVWKIQSGLCLR
RFEHAHSKGVTSLCFSMDSSQILSASFDQTIRIHELRSGKTLKELNGHSSFVNDASFTQD
GFHIISASSDGTVKIWNTKTSDCIHTVKSLSQTSEVPINNVIPLPQNPEHFVVCSHSSKV
VVLSMDGQTVKTFSSDRKEATDFVCCTLSPRGEWIYCVGEDLVLYCFNYTTGRLEKTLTV
HEKDVIGIAHHPHENLIATYSEDGLLRLWMPS
NT seq 1539 nt   +upstreamnt  +downstreamnt
atggccgtggagatggagccctcggatgtgatccgcctgataatgcagtacctcaaggag
aacaacctctaccggaccctgaccaccttacaggaggaaaccaccgtctccctcaacacg
gtggagagcatcgacagtttcatcgcagatataaaccgcggccactgggactctgtcctg
ttggccatcgagtccctgaagctgccagacaacacgctgatcgacctctacgagcaggtt
gtgatggagctgattgagatgagggaggtgggagcagctcgctcgctcctcagacaaacc
gaccccatgatcatgttgaagcagactcagccggagagatacgtccacctggagaacctg
ctgtcgtgctcctactttgaccctcgtgaggcgtacccgaaggggagcagcaaggagaag
cgacgcagggcgatagctgaggcgctggtgagggaggtgagtgtggtgcctccttctcgc
ctcatgggactcctggaacaagttggttcgctgagactacagcagcttccaggtcatctc
tccccagaaagccccatcgacacgtctggcaacaaggagagacatgtggtgaaagagagc
ttcccaacgcagctgtaccgacacatcaagtttggacgacggtcacatgtggagtgtgcc
tgtttctctcctgatggaaagtacctgataaccggatcggtggacgggttcattgaggtg
tggaacttctacactggaaaaattagtaaggatttaaagtaccaggcacaagacagcttc
atgatgatggatgatgctgtgctgtgtatgtgctttggccaggacaccgatcttctggca
accggatctcagaatggcaaaataaaggtgtggaagatccagagcgggttgtgtctgcgc
aggttcgagcacgctcacagcaaaggtgtgaccagtctgtgcttctccatggacagcagc
cagatcctcagtgcctcatttgatcagaccatcagaatccatgaactgaggtcaggaaag
acactcaaggagttaaatggccattcatcgtttgtgaatgatgcatccttcactcaagat
ggattccacatcatcagcgcctcatctgatggcaccgtgaagatttggaacacgaagacg
agcgactgcatccacactgtcaaatctctgtcccagacgtcagaggtccccatcaacaac
gtgattcctcttccccagaacccagagcactttgtggtttgcagccactcaagcaaagtg
gtcgtgttgagcatggacggtcagaccgtgaagacgttcagctcagacaggaaggaagcc
acagactttgtgtgctgcaccctgtcgccccgcggggagtggatttactgtgtgggagag
gatctggtcctgtactgcttcaactatacgacagggaggctggagaaaacgctgaccgtt
catgagaaagacgtcatcggcattgctcaccatccacacgagaatctgatcgccacatac
agtgaggacggcctcctgaggctttggatgccgtcgtaa

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