Hippoglossus stenolepis (Pacific halibut): 118123193
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Entry
118123193 CDS
T08308
Symbol
shank1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1 isoform X2
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
SAM_1
Ank_4
SH3_2
Ank_5
SAM_2
PDZ_6
PDZ
SH3_9
FERM_f0
SH3_1
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
118123193
NCBI-ProteinID:
XP_035036290
LinkDB
All DBs
Position
16:16710631..16797050
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AA seq
2464 aa
AA seq
DB search
MTMPFSPLSSDEEQQRMLGNNRHLYPGAEDEEEEEEEEEEEMEEDERDEDGEEEENGELE
GEEEDDEEEMVEEVRRGGLSRGGRSDGHRQAGKLAARPGGDRQIRPGNPGHTANPYSSNP
GPTHQQPANQIQQQQPRRLKERSTGSVPSEDTHIAMMVFRIGIPDIKQTKCLRFNPDATV
WKAKQQVLCSLTESLRDVLNYGLFQPATDGHDAKFLEEERLLKEYPQSFEKGVPYLEFRY
KTRVYKQTNLDEKQLAKLHTKASLKKFMDYIQTTAVDKMVKFLDKGLDPNFQDGDTGETP
LSLAVQCEPGGGESIRVLAEGGAHIDFRAKDGLTPLHKAVRGHRHTALLVLLSLGASPDY
KDRRGLTPLYHTVLTGGDTSCCETLLYHHTKLGIRDENGWDETHQACQHGNSQHLEHLLF
YGADSSSQNASGNTALHICALYNKESCARILLYRGANKDTKNNSGQTPFQVAVMSGHFEL
GEIIKNHRDTDVVPFVESPKYAPQRRESARTLTIPHPHPFLRANSDSSMNLPDWMAVPNA
PSTNIVSVQGYKHTGTLRSSSSPRGARTRSPSRGRIGDKEDRSRQSRRQGPAPASTPTQT
AGQRRRLYSAVPGRVFVATRAHSAQGEREISFSKGDRVKVLSVGEGGYWEGTVRGRTGWF
PSDCVEEVMLRSQDNRSESRGERAKRLFRHYTVGSYDSFDAPSDYIIKEKSVLLQKKDSE
GFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVK
VGHRQVVNMIRQGGNSLMVKVVMVTRNPDMEEGSRKKIPQQSKRLSTPAIALRSKSMTSE
LEEMVERAATPWKKKSEFESSQVTEKKRTVYQMALNKLDEILAAAQQTISTNEAPGTRGQ
GPKRDRGRSFYGNEQNYGDQSGMGMMSSGLGLGYDRGQYASGHGPPHGMRRQKSIGVPEE
ERKFLHPPNVKFARSLSVPGPDDIPPPPTTAPPEPPFSSAPPLGWRAKSSQQPSVSVSQS
TSTSAHYQPFSQSVHFTQSGRERAGAPPTGPIGGAVDHTTSYSNAAAHTSQSRTASRKVA
YTGEPVGAGIGAGGGAKAGGLRRGYSSAVPPSSIATVMPQQQQTTQSHPQRVDRSAAGAG
GPKGGARRGKGPLVKQSKVDDLRAGQGTLGGKGSVEKSSIPIPTIIVKAPSTSSSGRSSQ
GSSVEADAPAPGETDESKTPHGPPPSTPAPQPPAPPSIPAPPPPSLPSIRAQENLDFTSQ
FGAAIVGAARRDRERFHEARRKSASLFMSAEEDVSLGGVSDGIGARTQVSQQQLSTQAES
TSTRLRPSKSIDEGMFSGDTFIHHTRSMPPAFGLPEYSSSALDYQPKSVPTDLYTAAGRQ
SAPSATTTFIHPLTGKALDPTSPLGLALAARERALRDDSRYRRGTEHHFSRQMSSVVYPS
SAVTSQPVSSVAQSSSTSYLVTSSSLAATTPTVGRPPSPRILRGVGSMWGEEGSGGERER
EGGGAREGLRVRFSEDKTVHTHHYQSQPYQPTYKERERERSRERDRELSRERERDKEREG
YMRRAEQAAANAAAAESSAQQGSQSQQPQRPSFLRMESQSDAYILSLTPPSPPHTSSQQT
AKTTGSTGTGLMVLPPPALSVDADDGFVYADPLPPPLEFANSFDRGIGGMSAYAKHGMLP
NSLTSRRQQVPPPPPPPPPPPPPPPPQKETFASGFPAHTPLPSPQAGDSTASSLTSYDSE
VANLTQSAHSPSQTSPNPLPPSSPSTLCPTSTAGPPPPPSVSPPLPPGSYHRPFSMSHPH
HLYNSTHAPGRSSPTPPLHTVAPPPSYRGHPAPSSTAATSAPLRGTASHATTASCAAITT
TAATTTSTSTQLYQERTHTTSSAAITGSRRTGEHHRTPPATKKGESQETVVDSGIEELDS
RSSSDHHLDTILSLSGAGVRGDRLDRGERGVGGRLGGGGAGESERGGDFLESYMSYLDGQ
TFEMQNATAVASTYPKANRFREGGRVGDLHRQTSTVPASFHSHRRRDEQEDDEVEEGVVE
DERGPDGYRVRDMQTMGRPTSPYFDRPRTPEMKPLWGEGQVTGDGSSQSGTLLEGKRIYP
PASSMKPSIINELSSKLQHRTRESWSSQRTLSRHRSRNRFSEDSASALSPPSARSQSPSP
VSMSQPSLSPSPTAASQYHNWGRSPSPQPPAASQPPRSHSPLSPTSYSPYPTSPKHRPVY
RTKALEFQFIPSRESRKAESHILQRRRAPSPLISPSERPKLGPPRPSSLPLLPTTPLYSA
MYDLRGSITPPSPGNPLGDPYFSPSPPLFAPSGAPPPPNSALLVSRSLSPTHFLSGTSSP
PLHPIPPPTCLSYPHLPPPSPTKPFASKPLPYWTKYDVADWLGYLNLGEHRERFLDNEID
GTHLPSLTKDDFLDLGVTRVGHRMNIERALRTIMDRLSSSPFPISVLSPREGQTERRRDD
GSRS
NT seq
7395 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgccattcagccccctgtccagcgacgaggagcaacaaagaatgctgggaaac
aatcgacatctctatccaggggcagaggacgaggaagaggaggaggaagaagaggaggag
gaaatggaagaggatgagcgcgatgaggacggggaggaggaggagaatggcgagctggag
ggggaggaggaagatgacgaggaggagatggtggaggaggtcaggcggggaggcctgtcg
agggggggcagaagtgatggacacaggcaggcagggaaactggctgcacggcccggtggg
gacagacagatccggccagggaaccctgggcacaccgctaacccctattcatccaaccct
ggacccacacaccaacagccagccaatcagatacagcagcagcagccgaggaggctgaag
gagcgcagcaccggctcggtgccatctgaggacacccacatcgccatgatggtgtttcgc
attgggatcccagacattaagcaaacgaaatgtttgcggttcaacccagatgccaccgtg
tggaaggcaaagcagcaggtgctgtgctccctcaccgagtcgttgcgggacgtcctgaac
tacggtctgttccaaccggccaccgacggccatgacgccaagttcttggaggaggagagg
ctgctcaaagagtacccacagtcctttgagaaaggggtgccatatttggagtttcgatac
aagaccagggtgtacaaacagaccaatctggatgagaagcagctggccaaactgcacact
aaggccagcctgaaaaagttcatggattatatccaaaccactgctgtggacaagatggtc
aagttcttagacaagggcctcgaccccaacttccaggacggggacaccggcgagactcct
ctgtccctggctgtgcagtgtgagccaggtggaggtgagtccatccgcgtcctcgccgag
ggaggggctcatattgacttccgtgccaaagatggactcacaccgctacacaaggctgtt
cgaggccaccgccatacagccctgctggtcctcctgtctctgggagcgtctccggactat
aaggaccgacgagggctaacgccgctctaccacactgtgctgacagggggcgacacctcc
tgctgcgaaacactgctttaccaccacaccaagctgggcatcagggatgagaacggctgg
gacgagacacaccaggcctgtcagcatggcaactcgcagcatttggagcacctcctcttc
tatggggccgattcctcctcccagaatgcctctggaaacactgccttgcacatctgtgct
ttatacaacaaggaaagctgtgcacgaattctgctctaccggggagcaaataaagacacc
aagaacaacagtgggcagaccccgtttcaggtggctgtcatgtccggccattttgaactg
ggagaaataattaaaaaccaccgggatacagatgtggttccctttgtggagtctccaaag
tacgccccccagaggcgagagagcgcccgcacgctgacgataccccaccctcatcccttc
ctgcgggccaacagcgacagcagcatgaacctgccggactggatggcagtgcccaacgct
ccgtcgaccaacatcgtctccgtgcagggctataaacacactggtaccctgcggagctcc
agtagtcccagaggagcgaggacacgttccccgtcaagagggaggatcggtgacaaggag
gaccggagcaggcagagtcggaggcaggggcctgctcctgccagcacccccacgcaaacg
gcagggcagcggcgacgcctgtacagcgccgtcccaggacgagtctttgtcgccactcga
gcgcactctgcacagggagagcgagaaatcagcttcagtaagggggacagggtcaaagtg
ttgagtgttggcgagggtggttactgggaggggacggtcagaggtcgcacaggctggttc
ccctccgactgtgtggaggaagtgatgcttcggagccaagacaaccgatcagagagccgt
ggagaaagagccaaacggttgttccgtcattacacggtgggatcctacgacagctttgac
gctcccagtgactacataatcaaggaaaagtcggtgcttctgcagaaaaaagacagcgaa
ggcttcggctttgtgctgagaggagccaaagctcagactcctatcgaggagttcactcca
accccagccttccccgccctgcagtacctggagtcagtggacgagggaggagtggcctgg
agagctggtctgaggatgggggatttcctgatcgaggtcaatggtcagaatgtggttaaa
gttggacaccggcaggtcgtcaacatgatccggcaaggtggcaacagcctcatggtcaag
gttgtcatggtaacccgcaacccagacatggaggaaggttcgaggaagaaaattccccag
cagagtaagaggctgagcactcccgccatcgccctgcgatccaaatccatgacctccgag
ctggaggagatggtggagcgagctgctaccccttggaaaaaaaaatcagaattcgaatcc
tcccaagttacagagaagaagaggacagtctatcagatggctttgaataaactcgatgaa
attcttgcagcagcccagcagacaatcagcaccaatgaagcgcctgggacacggggacag
gggccaaaaagagacagagggcgaagcttctatggcaatgagcaaaattacggggaccag
tccgggatggggatgatgtcatcaggcttgggcctcggctacgaccgtggacagtatgcc
tcaggtcacggcccaccgcacggtatgagacggcagaaatccatcggggtgcctgaggag
gagaggaagttcctgcatcctccaaacgtgaagtttgcacgcagtctttcggtgcctggc
ccagatgacatcccccctcctcctaccactgctccaccagagcctcccttctcctctgct
ccaccactaggctggagagccaagtcttctcagcagccctctgtctccgtgtcccagtcc
acatccacctctgcgcactaccagcccttctcccagtcagtgcacttcacccaaagtggc
agggagagggcaggtgctccccccaccggccccattggaggagcggtcgaccacacaacc
tcatattcaaatgctgctgcccacacgtctcaaagcaggactgcttcgcggaaggttgcc
tatactggggagcctgttggagctggcattggagctggtggaggggcaaaggcggggggt
cttaggagaggctacagcagcgctgtccccccatccagcattgccactgtaatgccccag
caacaacagactacccagagtcacccccagcgagtagaccgcagtgcagctggagcaggg
ggtcctaaaggcggagcccggagaggtaagggccccctggtgaagcaatccaaggtagat
gacctgcgtgcgggccaaggtacactggggggaaaaggctcggtggagaaaagttccatc
cccatccccaccattattgtcaaggctccttcaaccagcagcagtggacgcagcagccag
ggcagcagtgtggaggctgatgctccagcaccaggggagacggatgaaagcaaaacaccc
cacggtccaccaccctccactcctgctccccaaccccctgctccgccttccattccagct
ccgccgcctccatctttgccttctatccgcgcccaagaaaacctggactttaccagccag
tttggggctgccattgttggcgcagctcgccgagacagagaacgatttcacgaagcccgc
agaaagagtgcctccttgtttatgtctgctgaggaggacgtgagtcttggaggagtgagt
gatggaataggagcaaggactcaggtgtcacagcaacagcttagcacacaggctgaaagt
acatccacacggctgcgcccgtccaagtctattgatgagggcatgttctctggggacacc
tttatccatcacacccgcagtatgcctccggcctttggtctacctgaatactcctcttct
gccctggattatcagcctaaatctgtgcctactgacttgtacacagcagcaggccggcag
tcagccccctccgcaaccaccacctttattcacccactaacaggcaaggctcttgacccc
acatcgccattaggcctagccctcgctgccagagagcgtgctctgagagatgacagcagg
tacaggcggggaacagagcaccacttcagccgccagatgtcgagtgtggtgtatccttca
tctgctgtcacctctcagccggtgtcatctgtcgctcagtcctccagcacctcctacctt
gtcacttcgtcttctctggctgccactacacccaccgttggccgcccgccgtcacccaga
atcctcagaggagttgggagtatgtggggtgaggagggcagcggaggagagagggagcgg
gaaggaggaggggctcgcgaggggctacgagttcggttctctgaggacaaaacggtccac
acgcaccactaccagtctcagccgtatcaacccacctacaaggagagggagcgggagagg
tcaagggaacgggacagggagctgtcaagagaaagagagagagacaaagagagagagggt
tacatgaggagggcagagcaggctgccgccaatgcagcggctgctgagagctccgcccag
caggggtctcagtctcagcagccacagaggccatcttttctcaggatggaaagtcaatct
gatgcctatatcttgtccctcacccctccctctcccccacataccagttctcagcagaca
gcgaagactactgggagcactgggactggtctgatggtcctccctccccccgccctctca
gttgatgcggacgatgggtttgtctacgccgatcccctcccacctccgttagagtttgct
aacagcttcgacaggggaataggggggatgtcagcatacgcaaaacacgggatgctccca
aacagcctgacctcccgcagacagcaggtaccaccccctcctccccctcctcccccaccg
ccaccacctccacccccccaaaaagaaacatttgcaagtgggtttcctgctcatacgccc
ctgccctcacctcaagcaggggactccaccgcctccagcctcacatcttatgacagtgag
gtggctaacctgactcagtctgctcactcaccctcccaaacatcacccaaccctctgccg
ccttcctcaccctctaccctgtgccccacctcaacagcaggacctccccctcccccgtca
gtctcaccaccgcttcctcctggatcctaccacagacccttctctatgtcacacccccac
cacctttacaacagcactcatgctcctgggcgctcttctcccacgcctcccctgcacaca
gttgcacctcccccgtcctaccgtggacacccagcaccgtcctccactgctgccacctct
gctccacttaggggcactgcctcccatgccacgaccgctagctgtgccgctataaccacc
actgctgccaccacaacaagcacctccactcagctctaccaggagcgaacacatacaaca
tcctccgccgctatcacaggcagtcgaaggaccggggagcaccaccgcactcctcctgct
accaagaaaggagagtcccaggagacagtggtggactctgggattgaagagcttgacagc
cgcagcagcagtgaccaccacctggacaccatcctctctctaagtggagccggtgtccgt
ggtgacaggctggaccgaggggagaggggagttggaggacgtttggggggaggcggggca
ggggagtcagagaggggaggagatttcctggagtcctacatgagctacttggacggacag
acttttgagatgcagaacgccacagcagtagcttccacatacccaaaagctaacaggttc
agagagggaggtcgcgttggggatctgcacagacagaccagtactgttcctgcatccttc
cactcccaccgacgacgagacgagcaggaagacgacgaggtcgaggagggagtggtagag
gacgaacgtggcccggatgggtacagggtgagggacatgcagaccatgggacgtcccact
tcaccgtactttgatcgaccacgcacgcctgagatgaagcctctctggggcgaggggcaa
gtgaccggtgatggcagcagccagtccgggacacttttagaggggaagaggatttaccca
cctgcatccagtatgaagcccagcatcatcaatgagctgagcagcaaactgcagcatcga
accagggagagctggagcagccagagaacattgagcagacacagaagcagaaacagattt
tcagaagactcagcctcagccctgagccccccctcagcccgatcccagtccccgtctcca
gtctcgatgtcacagccatcattgtccccgtcccccacggctgcctcccagtaccacaac
tgggggcgatccccgtctcctcagcctccagccgcctctcagcctccgcgttctcattct
ccgctgtccccgacatcttattccccttaccccacctcccccaaacacagacctgtctac
cggaccaaagccctcgaattccagttcatcccaagtcgcgagtcccgtaaagcagaatca
cacatactccagcgcaggcgagcaccgagccccctcatctccccttcagagaggccgaag
ctgggcccacctcgtccatcctcccttccacttctccccaccacacccctatacagcgcc
atgtacgacctccgaggttcaattaccccaccatcgcctggaaaccctctcggtgatcct
tacttctcgccttctcctcccctttttgccccctctggagcccctcctcctccaaactcc
gctttacttgtttcacgatccctctctccaacacatttcctgtctgggacctcatctccc
ccgctgcatcctatccctccacctacctgcctgagttacccccatctaccgcccccgtcc
cctaccaagccgtttgcctccaagccgctgccctactggaccaagtatgacgttgcagac
tggctgggatacctgaacctgggtgagcacagagagcgtttcctggacaatgagattgac
ggcacccacctgccgtcgctaaccaaggatgattttctggacttgggcgtgacacgcgtt
ggccatcgcatgaatatagaacgggccctgaggactataatggacaggctgtccagcagc
cccttccccatttctgttctctcccctcgggaaggacagactgagaggaggagggacgac
gggagtcggagctga
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integrated database retrieval system
