Hippoglossus stenolepis (Pacific halibut): 118123238
Help
Entry
118123238 CDS
T08308
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118123238 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsp03041
]
118123238 (ddx5)
03009 Ribosome biogenesis [BR:
hsp03009
]
118123238 (ddx5)
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118123238 (ddx5)
Spliceosome [BR:
hsp03041
]
Complex A
U1 snRNP components
U1 related factors
118123238 (ddx5)
Complex B
118123238 (ddx5)
Ribosome biogenesis [BR:
hsp03009
]
Eukaryotic type
Pre-60S particles
Helicases
118123238 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
118123238
NCBI-ProteinID:
XP_035036400
LinkDB
All DBs
Position
16:2859911..2865202
Genome browser
AA seq
624 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGGGGGPPRFGGNRGGGGGGGGGKFGNPGERLRKKHWNMDELPK
FEKNFYQQHPDVDRRPPQEVELYRRTKIITVKGRDCPNPIAKFHEASFPTYVMDVITKMN
WTDPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL
APTRELAQQVQQVAAEYGRASRLKTTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE
AGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF
LKEYVQINVGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRR
CDDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFV
INFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLIAVLREANQAINPKLLQ
MAEDRGGRSRGGRGGDFRDRDRYSSGRRDFGSFRDRDNGRGFDNGPNKFGTNTQNGGYGN
STGNGSGNGYGGGSFTGNGQSNFTGNQTGAFGAQTTFQAPQFAPVKAGAPNGASHPPFPF
PPAQAPQQHPPPLVPYAMPPQFTQ
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatactccgacagagaccgcggccgcgacagagacagaggctatggcggaggc
ggaggacctcctcgctttggcggcaaccgcggcggtggaggcggcggcgggggaggaaag
ttcgggaaccccggtgaacggctccgtaagaaacactggaacatggacgagctccccaag
ttcgagaagaacttctaccagcagcacccggacgtcgaccgcaggccaccgcaagaagtg
gagctgtacaggaggaccaaaatcatcacagtgaaggggagagactgcccgaaccccatc
gccaagttccacgaggccagctttcccacttatgtgatggatgtgatcaccaaaatgaac
tggaccgacccgacacccatccaggctcagggatggcctctggcgcttagtggcaaggac
atggtcggcattgctcagactggctctggcaaaactctttcgtatctgttgcccgccatc
gtgcacatcaaccaccagccgttcctggaacgtggcgatgggcccatttgtttggtgctg
gcccccacccgtgagctggctcagcaggtgcaacaggtggctgcagaatacggtagagct
tctcgcctgaagaccacctgtatctacggcggcgcacctaaaggaccacagattcgtgac
ctggaaagaggtgtggagatttgcatcgccactccgggcagactcattgacttcctggag
gctggaaagacaaatctccgtcgttgcacatatctggtgctggatgaggccgacagaatg
ctggacatgggcttcgaaccacagatccgaaaaatcgttgaccaaatcaggcctgaccgt
cagactctgatgtggagtgctacttggcccaaagaggttcgtcagcttgcagaagacttc
ctgaaggaatatgtccagatcaatgtcggggctctgcagctcagtgccaaccacaacatc
ctgcagatagtcgacgtctgcaatgacggggagaaggagaacaaactgatccgtctgctt
gaggaaatcatgagtgagaaggagaacaaaaccatcatctttgttgagacaaagaggcga
tgtgatgacctcaccaggaggatgagacgtgatgggtggccagctatgggaatccatgga
gataaaagccaacaggaaagagactgggttctcaatgagttcaaatatggaaaggctcca
attcttattgctacagatgttgcttccaggggtctagatgttgaagacgtgaaatttgtc
atcaactttgactaccccaacaactcagaggactatatccaccgcattggcagaacagct
cgtagtcaaaagactggaaccgcttataccttcttcactcccaacaacatgaggcaggcc
agcgacctcatcgctgtgctccgcgaggccaaccaggcgatcaaccccaagctcctccaa
atggcagaagacagaggaggtcgttcaaggggaggccgaggtggtgatttccgggacagg
gataggtattcctctggaaggcgtgattttggcagttttagggatagggataatggtaga
gggtttgacaacggaccaaataaatttggcacaaacacacaaaatggaggctatgggaac
agtactggcaacggcagtggcaatggctacggtggaggcagcttcactggtaacggacag
tccaactttactggcaaccaaactggggcctttggagcccagaccaccttccaggctccg
cagtttgcccccgttaaggccggcgctccgaacggcgcaagtcaccccccgttccccttc
cccccggcacaggcgccacagcagcatcctcctccactggtgccgtacgccatgcctcct
cagttcactcagtaa
DBGET
integrated database retrieval system
