Hippoglossus stenolepis (Pacific halibut): 118123271
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Entry
118123271 CDS
T08308
Symbol
casc3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03013
Nucleocytoplasmic transport
hsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118123271 (casc3)
03015 mRNA surveillance pathway
118123271 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118123271 (casc3)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118123271 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
118123271
NCBI-ProteinID:
XP_035036484
LinkDB
All DBs
Position
16:complement(546771..555543)
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AA seq
803 aa
AA seq
DB search
MADRRRRRRRASQDSEDDDESGSGSDSGRSASPTTKTRAREPEPAEAPAVRPEPKNNAES
ECESEDGVGEAVLSDYESADPEDNGSHSEGVEEEEEAEQFSDEEAPAAAAAAAASESEPP
APSDPAPGEEGERVEVNEEEEQEEEQQQVEEQDEEQEEEQEEEPEREEGGESKEESKAEE
KENLTGERQSGDGQESTDDPETKVGGKPGQKLDDDEDRKNPAYIPRKGLFFEHDVRGHAQ
EEERPKGRNRKLWKDEGRWEHDKFREEEQAPKSREELIAIYGYDIRNGGGPGDRSYRQRR
PRQSVSPGRDKRWREGGGERAVRSWQGGGGGQNRGVPPPSSIHTSSTSSSSLPLSSAQRS
NNPSRPPPSRSRPSHQNQMHLPPQSHYRNDESNTPQMHPRERQGPKAHSEPAGDRGVVSR
GGRGSGGRGGPSLVFENSGTSQPGVEEKDLSSSAVKTVALSQPGGYQSASPRRQQKEQRG
GADRSVSGLAASSDTSLQSSSVANREASPPTERPVERKSYSLARRTRSRPTDLGSKQPSV
EEATVGGNASSPGSAGGRSWTGAGDGPSQTGSGGGGGLTELDADVARLSLAGQSWNQSPT
SYIRSEMRGLPSPLHIPAGPPQFSSMEEMGVGSSRAKRYSSQRQRAVPEPAPPMHLGVMD
GHYYEPMSYQGPIYAHGDGPTPIPPQGMLVPPEMHIPHPGLHPHQSGAPIANPALYAGPP
VSLSPGQPQQLLPPPFYPPPGVMTFPYPTMYPTPQAQAQVTYGGVTYYDTMQQQAQPKPS
PPRRTSQPVTVKPPPPEVPFASE
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgacggaggaggcgcgcgtcccaggacagcgaggacgacgacgag
tccggttcgggttcggacagcgggaggtcggcctccccgaccaccaagacccgggcgaga
gagcccgagccggcggaggccccagcggttcgacccgagcccaagaacaacgcggagtct
gaatgtgagagtgaagatggagtgggagaagctgtcctgtctgactacgaaagtgcagat
cctgaggacaacggctcccattcagagggagtggaggaggaagaggaggccgagcagttc
agcgacgaagaagccccagcagcagcagcagcagcagcagccagcgagtcagagcctccg
gcgcccagcgacccggcaccgggagaggagggggagcgggtagaagtcaatgaggaggag
gagcaggaggaggagcagcagcaggtggaggagcaggacgaggagcaggaggaggagcag
gaggaggagccagagagggaggaagggggtgagagtaaagaggagagcaaagccgaggag
aaggaaaatctcaccggagagagacagagcggcgacggacaggagtccacagacgaccca
gaaacgaaggtgggagggaaaccgggtcaaaagcttgacgatgacgaggacagaaaaaac
ccggcatacatccctaggaagggtctgttcttcgagcacgacgtcaggggtcacgctcag
gaggaggagagacctaaaggtcggaacaggaagctgtggaaagacgagggtcgctgggag
cacgacaagttcagggaggaagagcaggcgcccaagagccgcgaggagctcatcgccatc
tatggttatgacatcagaaacggcggcggcccaggagaccggtcgtacagacagcgcagg
ccaagacagagtgtgtctcccggcagagacaaacggtggagagagggaggaggagagcga
gcagtccgatcctggcaaggaggaggtggaggtcaaaaccgaggagttcctccaccttca
tccatccacacctcctctacatcatcttcctccctccctctctcctccgctcagcgcagc
aacaacccctccagacctccaccctcccgcagcagaccatcccaccagaatcagatgcac
ctcccacctcaatcccactacaggaatgatgaatcaaacacaccccagatgcatcccaga
gagcgacagggccctaaagctcattcggagcctgcaggcgacaggggtgtggtcagcaga
ggagggcgtggtagtggaggaagggggggtccctccctggtctttgagaacagtggcacc
agccaaccgggtgttgaggaaaaggacctgagctccagcgctgtaaagacagtggcgttg
tcacagccgggcggttatcagtctgcttcacccagacgacagcagaaggaacaacgaggt
ggtgccgaccgctctgtctctggattggcagcttcctctgacacctcccttcaatcgtca
tcagtggccaatcgggaagcctctcctcccacagagcggccggtggagcgtaaatcttac
tcgctggctcgcaggactcgctctcgacccacagacctgggaagcaaacagccgtccgtg
gaggaggcgacagtgggcgggaacgcctcgtcccctggcagcgcgggagggaggagctgg
acgggagcaggagacggaccgagtcagacgggaagtggcgggggaggggggctgaccgag
ctggacgcagacgtggctcgactcagtctggccggacagagctggaaccagagtccgacg
tcgtacatccgctctgagatgagaggcctccccagccccctgcacatccccgccggcccg
ccgcagttctccagcatggaggagatgggcgtcggctctagtcgggccaaacgctactcc
tcccaacgtcagagagccgtacctgagccggctccgcccatgcacctgggagtgatggat
ggccactactacgaacccatgtcgtaccagggaccaatctatgctcatggggatggcccc
acccccatcccaccacaaggcatgctggtcccgcctgagatgcacatcccccaccctggt
ctccacccacaccaatcaggggccccgatcgctaaccccgccctctacgcagggccacct
gtgtctctgtcacccgggcaaccacagcaactgctgccacctcctttctaccctccaccg
ggcgtcatgaccttcccttaccccaccatgtacccaaccccacaggctcaggcccaggtg
acctatggaggtgtgacgtactacgacacgatgcagcagcaggctcagcccaagccttcg
cccccccgccgcacgtcccagcccgtcactgtcaagccccccccaccagaggtgcccttt
gcctcagagtga
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