Hippoglossus stenolepis (Pacific halibut): 118123622
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Entry
118123622 CDS
T08308
Symbol
cacna1ha
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I isoform X1
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04010
MAPK signaling pathway
hsp04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118123622 (cacna1ha)
04020 Calcium signaling pathway
118123622 (cacna1ha)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118123622 (cacna1ha)
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
118123622 (cacna1ha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
GRP
Motif
Other DBs
NCBI-GeneID:
118123622
NCBI-ProteinID:
XP_035037005
LinkDB
All DBs
Position
16:complement(5122038..5169711)
Genome browser
AA seq
2349 aa
AA seq
DB search
MLVILLNCVTLGMFQPCEDVSCQLEWCRILKVLDDCIFAFFAVEMVIKMVALGIFGPNCY
LGDKWNQLDFVIVMAGVMEYSVDGHNASLSAIRTVRVLRPLRAINRVPSMRILVTLLLDT
LPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFLGEDVKTLYNKSLEPYYMSEEGEES
PFICSAPRENGMLRCNDLPPYIEEKMECSLEAPHQSSNGCVNWNRYYNVCQAGNFNPHKG
AVNFDNIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVV
IATQFSETKQRENALMREQRARYMSNDSTLASYSEPGSCYEEMLRYISHLYRKFTRRLQR
IYSGWHSKRRKKVNPNGSGGGSNGGGNGHGHGSSRGCGGSGPNSALWLRPIHNLLQHHQH
QHCRLSNGGQHTISVGTAEHTDREGGGEELEMKSLPVRRGSTHENNSGGSGAHPAVVSPG
MGVLLGRLNGGMNYPTILPSFVCSYSSKTPPPHSQQCRPGPEQHPTNHPASEHTETLNKL
YKLMGQHSRQRLLYQLAGVVPSPLLLELLSCPLCARSLETLELELGDLEGGRGEDGLHDF
PQSGDLRGGRGRSRRRGVVEYKNGAVRAWVNFREKLKRIVESKYFNRGIMIAILVNTLSM
GIEYHEQPEQLTDVLEISNIVFTSMFVLEMGFMLLAFGLFGYIRNPYNIFDSIIVIISVW
EIIGQSDGGLSVLRTFRLLRVLKLVRFLPALRRQLVVLMKTMDNVATFCMLLMLFIFTFS
ILGMHLFGCKFGLKTEDEDTIPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSPW
AALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRSESDDEKKSDNFEEDEKVEQLRDT
ELKMYSLMMTANGHVDPRGSMAPPIIMRTAATPMPTPKSSLGPESILGDELVGMPRYGEV
GLGFSETGAGHAESRRGSSTSIDPLAYDQHSLSLSSPGRRSPLPPRSWGSRRSSWNSLGR
APSLKRQDTSGERESLLSGEGGEEENGGEAKGEAGGNNRLRPGSLELLQASTLLPSIIAE
YGDCNGRTLTYDPNVNSDAKDDSSPEEDLDDDSSLYYWIKKKLLDMKPRWCKEHEDWALY
LFSPESLLRVWCQSVISHKIFDHVVLVFIFLNCITIALERPGIQLGSTERVFLSVSNYVF
TVIFFAEMAVKVVALGFCFGKQSYLQSSWNVLDGLLVFVSLVDILVSLAYTGGNRILGIL
RVLRLLRTLRPLRVISRAPGLKLVVETLITSLRPIGNIVLICCAFFIVFGILGVQLFKGK
FYICEGLDTKNVTNKSDCVPPNLRWIRRKYNFDNLIQALMSLFVLSCKDGWVNIMYDGLD
AVGVDQQPVRNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQDQEEEETRLREE
KRLKMIEKKRRSKENGGAEAKQRPYYADYSPVRLSIHTLCTSHYLDLFITFIICINVFTM
SIEHYNQPKYLEEVLKYCNYVFTFIFVIEALLKLLAFGIHRFFKDRWNQLDIAIVALSIV
GITLEELKMNAALPINPTIIRIMRVLRIARVLKLLKMAKGMRALLDTVMQALPQVGNLGL
LFMLLFFIYAALGVELFGRLKCTEDNPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGIM
KDTLRECHKDDVHCLPYLPLVSPIYFVTFVLMAQFVLVNVVVAVLMKHLEESNKEAKEDA
EMDAEIALEMAMERQRKQSTTSHGSSVEGAYVGPCPQSPEQEEEVQCEDPDLLSSRKMSV
SRMHSLPNDSYMFRPVRPASAPYALEEVDLSPQHHQHSGSVTSVQSQPCESGALLQVPDV
SPVHPRSPPALTLPRITPPTPSLSPRALRKQVAVKVDSVETQGCEQQERPNPVHRPPSSP
SPLSPHASSPSPHPPPPPPPSSPSALPLPPSLASAYPLPPASPSPLPPHLSCPSSLPPPP
SSPALLLPPPRSPRLPLRPASLRRPRPPSAASLCDPADEEVYHITSRRGRDEESKGKVGR
SHSLSPYTSPHSLDSSPLPPPLPPSSSKSTLSLLQAGLEDSDFRKGSSIDNQAFLDKPSS
LAVGYPDDHRRHSIEVCLPQAVIPDDEQPFAQEAHRSEKGGQAFPVRVQSVGGGHRKKKM
SPPCISIHPPSEKEPPQTSSPPKLADCSMMLRRRTPSYDLTPHSQTPSPMHTALTPIHKP
LQAHSPTHTLTLSRGSTPTHTQSYTPPHPSTPTHPHIPISPNIFIQPHAPLGPNTFSQSR
SHSPAARHSSLTGDCIPLPQFTFDQPQSRYMSGLSPGLSDADTATCSSPFDNRLGSAAGF
SAKNRRTAQ
NT seq
7050 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgatcctgctcaactgtgtgactctggggatgttccagccctgtgaagatgtc
tcctgccagttagagtggtgccgcatcctcaaggtgttggacgactgcatcttcgctttc
tttgccgtggaaatggtcatcaagatggtggccctgggaatcttcggccccaattgttac
cttggtgacaagtggaaccagcttgacttcgtcattgtcatggcaggggtgatggagtac
tctgtggatggtcacaacgccagtctgtcagccatccgtaccgtccgagtgctcaggcca
ctgcgggcgatcaacagagttccaagtatgcggatcctggtgacgctgctgctggacact
ctgcccatgttaggaaacgtcctcctcctctgcttctttgtctttttcatcttcggcatt
gtgggagtccagctgtgggcgggacttctgcgcaaccgctgcttcctgggagaggatgta
aaaacattgtacaacaagtccctcgagccctactacatgtctgaggagggcgaggagagc
ccgttcatctgctcggctccgcgcgagaacgggatgctgcgctgcaatgatttgccgccc
tacattgaggaaaagatggaatgctcactggaggctccgcatcaaagctcaaatggctgc
gtaaactggaaccggtactataatgtgtgtcaagccgggaacttcaaccctcacaaagga
gctgtgaacttcgacaacattggctacgcctggatagccatattccaggtcatcacactg
gaaggatgggtcgatatcatgtactatgtcatggacgcacactccttctacaattttata
tattttatactgctcattattgtgggctctttcttcatgatcaacttgtgcctcgtggtc
atcgccacccagttctctgagacgaagcagagggagaacgccctgatgagggagcagcgc
gcacgctacatgtccaacgactccacgctcgccagttacagcgagcccggctcatgctac
gaggagatgctacgctacatcagccacctgtatcgcaagttcacacgcaggctgcagagg
atatactccggatggcacagtaaacgtcgtaaaaaggtgaatcctaatggaagcggtggc
ggcagtaacggcgggggtaatggacacggccacggttccagcaggggctgcggcggatcg
ggccccaatagcgcattgtggctgaggccgatccacaacctcctgcagcaccaccagcac
cagcactgtcgcctcagcaacggtgggcagcacaccatcagcgtgggaaccgctgagcac
acggacagagagggaggaggggaggagctggagatgaagtcgcttcctgtgcggagagga
agtacacatgaaaataacagcggcggtagcggtgcccacccagctgtcgtcagccctggc
atgggggtattgctcgggcggctgaatggtgggatgaactatcccaccatcctgccgtct
tttgtgtgcagctacagcagcaagacgccgccgcctcactcccagcagtgcaggccgggc
ccagagcagcacccgacaaatcacccggcgtcggaacacacggagacgctgaacaagctc
tacaagctcatgggacaacacagtcgccagaggctgttgtaccagctggcgggcgtggtg
cccagccctctgctcctggagctgctcagctgccctttgtgtgctcgcagcctggagacc
ttagagctggagctgggagacctggagggaggaagaggagaggacggactgcacgacttc
ccccagagcggagacctgagaggtggcagaggtcgaagcaggcggcggggggtggtggag
tacaaaaacggagcggtccgggcctgggtgaacttcagggagaagctgaagaggatcgtg
gagagtaaatacttcaatcgggggatcatgatcgctatcctcgtcaacaccctcagcatg
gggatcgagtaccacgagcagcccgagcagctgactgatgtgttggagatcagtaacatc
gtcttcaccagtatgttcgtcttggagatgggcttcatgctgctggcgttcggcttgttc
ggatacatcaggaacccgtacaacatattcgatagcatcatcgttatcatcagcgtgtgg
gaaatcattggccagtcagacggcgggctgtccgtcctgcgaacgtttcgtctgctgcgg
gtcctgaagctggttcgcttcctgcccgccctgaggagacaactggtggtgctgatgaag
accatggataacgtggccaccttctgcatgctgctgatgcttttcatcttcacgttcagt
atactgggtatgcatctgttcggctgcaaattcggtctcaaaacggaagatgaagacaca
atccctgaccgcaagaactttgactctttactttgggccattgtcaccgtgttccagatt
cttacccaggaggactggaacgtggtgttgtataacggcatggcctctacctctccgtgg
gcggccctctactttgtcgctctcatgacatttggcaactacgtgctcttcaatttgctg
gtggccatcttggtcgagggcttccaggctgagggtgacgcaaacaggtccgagtcagac
gatgagaagaaatcggacaactttgaggaggacgagaaggtagagcagctcagagacacc
gagctaaagatgtactccctgatgatgacagctaatggtcatgttgaccctcgcggctcc
atggctcctcctataatcatgcgaacggcagccacacccatgcccaccccgaagagctcc
ctgggacccgaatccatcctcggggatgagctggtggggatgcctcgatacggcgaggtg
ggactgggcttttcggagacgggagctggtcacgcagaatctcgccgtgggagctccacc
tccattgacccgttagcctatgaccagcattctctgagcctctcaagtcccggacgacgc
tcccctctccctccccgctcctggggaagccgccgctccagctggaacagcctgggaaga
gcgccgagcctcaaaaggcaagacaccagcggagagagggagagcctgctgtccggtgag
ggaggagaggaggaaaatggcggggaagccaagggggaggccgggggaaacaaccgatta
cggccgggctccttggagctgctgcaggcgtctactctcttgccttccatcatagcggag
tatggggactgcaacggcaggaccctgacgtacgaccccaacgtgaactccgacgccaag
gacgattcctcgcctgaagaagatctggacgatgatagctctctgtactactggatcaag
aagaagctccttgacatgaagccccgctggtgcaaagagcacgaggactgggcgctgtac
ttgttctctccagaaagcctattgcgtgtttggtgccaaagtgtgatctctcacaaaata
ttcgaccatgtggttctggttttcatcttcctcaactgcatcaccattgctctggaaaga
cctggaatacagctgggcagcacggagcgagtctttctgagcgtgtccaactacgtcttc
actgtgatcttctttgctgaaatggccgttaaggttgtagctctgggtttctgcttcggc
aagcagagctaccttcagtccagctggaacgttctggacggtttgttggtgttcgtgtct
ctggtcgacattctggtctctctggcctacactggtggaaacaggatcctgggcatcctc
cgagtcctgcgtctgctgcgaactctacgtccactcagggtaatcagtcgagccccggga
ctgaagctggtagtggagactctcatcacctctctcagacccatcgggaacattgtcctc
atctgctgcgccttcttcattgtcttcggcatcttgggggttcagctgttcaaggggaag
ttctacatctgtgaaggtctggacacaaagaacgtcaccaacaagtcggactgtgtgccg
ccgaatttacgctggatacgaaggaaatacaactttgacaacctgatccaggccctgatg
tcgttgttcgttctgtcgtgtaaggatggctgggtcaacatcatgtatgacgggctggat
gcggtgggagtggaccaacagcctgtgagaaaccacaacccctggatgctgctctacttc
atctccttcctgctcatcgtcagcttcttcgtcctcaacatgttcgtcggcgtcgtggtg
gagaacttccacaagtgccggcaggaccaggaggaggaggagacccgcctgcgggaggag
aagaggctcaaaatgatagagaaaaagcgcaggagtaaggagaatggaggagctgaggcc
aagcagaggccttactacgcagactactctccggtgcgtctgtccatccacacactgtgc
accagccactacctggacctcttcatcaccttcatcatctgcatcaacgtctttaccatg
agcatcgagcactacaatcaaccgaagtatttggaggaggtcctgaagtactgcaactat
gtgttcaccttcatcttcgtcatcgaggccctgctcaaacttctggcatttgggattcac
cggttcttcaaagacaggtggaatcagctggatatagctatcgtggcgttgtccatcgtg
ggcatcaccctggaggagctgaaaatgaacgcagcgctgcccataaacccgactatcatc
agaatcatgagagtgctcaggatagcaagagtgctgaaacttctgaagatggccaaaggg
atgagagctctgctggacacggtcatgcaagcgctgccacaggtgggaaacctcggcctc
ctcttcatgctgctcttcttcatctacgctgcgctgggagtggagctctttggcagactg
aaatgcaccgaagataacccgtgcgagggcctgagtcgtcacgcaacttttgaaaatttc
gggatggccttcctcacactgttccgtgtgtccactggagacaactggaatgggattatg
aaagatacactaagggaatgtcataaagatgacgtccactgtctcccctacctgcccttg
gtctctcccatttacttcgtcaccttcgtgctcatggcccagttcgtcctggtcaacgtg
gtggtggctgttttgatgaagcatctcgaggaaagcaacaaggaggctaaagaggatgcg
gagatggatgcagagatcgccctggaaatggcgatggagaggcaacgcaaacaaagcaca
acctcccacggcagctcggtggaaggagcctacgttgggccgtgtccacagtcccctgaa
caggaggaagaagtccagtgtgaagacccagacctgctgtcgtcaaggaagatgtccgta
tccaggatgcactccctgcctaacgacagctacatgttccgacccgtgcggcccgccagc
gccccctatgctttggaggaggtcgatctcagtccccagcaccaccagcattcaggctca
gtgacgtcggttcagtcgcagccatgtgagagtggcgctctgctgcaggttccggacgtt
tcccccgttcacccccggtcgcctcccgccctcaccctgccccgcatcaccccgcccaca
ccgagcctgtctccccgtgccctgcgcaaacaggtggcagttaaagtggattcggtggag
acgcagggttgcgaacaacaggagaggccgaaccccgtccatcgtcctccctcgtcccct
tctcccctctctcctcatgcctcctccccatctccccaccctcctcctcctcctcctccc
tcctctccctcagccctccccctcccacccagcttggcctctgcctacccgcttcctcct
gcgtctccctcacctctgcctcctcacctgtcttgcccctcttccctccctcctccgcca
tcttctcccgcacttctcctccccccgcctcgctctccgcgtctcccgctgcgccccgca
agcctccggagacccagaccaccctccgccgcctccctctgcgacccggccgacgaggag
gtgtatcacatcaccagccgcagggggagggatgaggagagcaaagggaaggtcggccga
agccactccctctccccttacacttctccacactctctcgactcctcgccgcttcctccc
ccgctaccgccctcctcctcaaagagcacgctcagtctgcttcaggcgggattggaggac
agtgacttcaggaagggctcaagcatcgacaaccaggccttcctggacaagccctcatca
ctcgccgttggttaccctgacgaccaccgccgccattccatcgaagtctgcctcccacag
gccgtcatccccgacgatgaacaacccttcgcacaagaggcccaccggtcggagaagggt
ggccaggcattccctgtccgggtgcagtcagtcggggggggccacagaaagaagaagatg
agtcctccctgcatatccatccacccgccctcagagaaggaacccccccaaacctcctca
cccccaaaacttgctgactgcagcatgatgctgaggcgcaggacaccctcctatgatttg
acgccacactcacagacgccctccccgatgcacacggcgctcacacccatccacaaacct
ctgcaagcacactcaccgactcacacactgacactctcgcgggggtctactccgacacac
actcagtcatacacccccccgcacccgtccacacccacacacccacacatccccatcagt
ccaaacatcttcatccagcctcatgcacctctcggtccaaacaccttctcacagtcacgc
tcccactcccccgcggcgaggcactcgtccctcacgggggactgcatccccctcccccag
ttcaccttcgaccagccacagtccagatacatgagcggcctatcacccggcctgtcagac
gctgacacggccacctgctcctcccctttcgacaacagactgggaagtgctgcgggattc
agtgcaaagaaccggaggaccgcccagtga
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integrated database retrieval system
