Hippoglossus stenolepis (Pacific halibut): 118123835
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Entry
118123835 CDS
T08308
Symbol
ddx39ab
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsp03041
]
118123835 (ddx39ab)
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118123835 (ddx39ab)
Spliceosome [BR:
hsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
118123835 (ddx39ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
118123835
NCBI-ProteinID:
XP_035037358
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All DBs
Position
16:2279070..2284219
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AA seq
427 aa
AA seq
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MAENDVDNELLDYEEDEEPQGAPESAAPAGKKEVKGSYVSIHSSGFRDFLLKPELLRAII
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKAAVFFGGMAIKKDEDVLKKNCPHIVVGTPGRILALIR
NKTLGLKNVKHFVLDECDKMLEQLDMRRDVQDIFRITPHEKQVMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCI
ALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKILNDVQDRFEVNVAELPDEIDIS
SYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgacgttgacaacgagctgctcgactacgaggaggatgaggagccacaa
ggagcacctgagagtgcagcccccgccggcaagaaggaggtgaagggctcctacgtctcc
atccacagctccggcttcagggatttcctgctcaagccagagctgctgcgcgccatcatc
gactgtggttttgagcatccatctgaagtccagcatgaatgcatcccacaagccatcttg
ggcatggacatcctgtgtcaagccaagtctggtatgggcaagacagccgtgtttgtgctc
gccacactgcaacagattgaacccgtcgacggacaggtgtctgtgttagtcatgtgccac
acacgagagctggccttccagatcagcaaagagtatgagcgcttctccaagtacatgccc
acagttaaagcagcggtgttcttcggcggcatggccatcaagaaggacgaagatgtcctg
aagaagaactgcccccacatcgtcgtcggaacacccggtcgcatcctcgctctcatccgc
aacaagaccctcgggctgaaaaacgtgaaacattttgtcctggatgagtgtgacaagatg
ctggagcagctagacatgaggcgtgacgttcaggacatcttcaggatcacaccccatgag
aagcaggtcatgatgttcagtgcaactctgagcaaggagatccgaccagtgtgccgcaaa
ttcatgcaggatcccatggaagtatttgtggacgacgagaccaaactcacacttcatggc
ctgcaacagtactactgcaagctgaaggacagtgagaagaaccgaaagctcttcgacctc
ctcgacgtgttggagttcaaccaggtggtgatctttgtcaagtcagtccagcggtgcatc
gctctctcccagcttctggtggaacagaatttcccggccatcgccatccacaggggaatg
gctcaggaggagaggctgtctcgctatcagcaattcaaggacttccaaaggcggatcttg
gtggcaactaacctttttggacgagggatggacatcgagcgagtcaatatcgtcttcaac
tacgacatgcccgaggattctgacacctatttacacagggtcgcccgtgctggtaggttt
ggaaccaaaggcctggctatcacctttgtgtctgacgagaccgacgccaagattctgaac
gacgtgcaggaccgcttcgaggtcaacgtggccgagctgccagacgagatcgacatctcc
tcttacatcgagcagtccagatga
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