Hippoglossus stenolepis (Pacific halibut): 118123911
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Entry
118123911 CDS
T08308
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
hsp01001
]
118123911 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
hsp04054
]
118123911 (ciita)
Enzymes [BR:
hsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
118123911 (ciita)
Protein kinases [BR:
hsp01001
]
Serine/threonine kinases: Other
TAF1 family
118123911 (ciita)
Pattern recognition receptors [BR:
hsp04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
118123911 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
AAA_16
nSTAND3
NLRC4_HD2
nSTAND_NTPase5
NB-ARC
AAA_22
VapE-like_dom
CBFB_NFYA
bCoV_NS7A
TsaE
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
118123911
NCBI-ProteinID:
XP_035037490
LinkDB
All DBs
Position
16:complement(4778309..4789737)
Genome browser
AA seq
1419 aa
AA seq
DB search
MKTQARCPDAKLEVKTELRVACRTLDLYNLENTDSSLTLDTRGAADSMKGLCYSASDSIT
TTGVNMEPFSVSGAAGNASPVEACADNITATCLEDHLCVRCVADGTTHTTDDLMCVSGDA
QWGTDAGFADVAHLFLTCSAKDSPTKAQDYSSYSEMDQSMTLDNLEQILRTDFYEEDEDE
GRVGSHWGAKMLEVDQDPHDFGDLPDDLSEFLDDEYLLGTDVFFGDPWFNPEELTNFNDV
AVLPEQPCTGGHQQGQTDQFTGIQNKRRKRQRVPRSQRCTDEKKPPSTPKRHRAAGADVE
AKLSPAEAANPTTTPTRFLHLQPPIHFITIPDSKGYQLIPNVRLSPPVIRLRLPSAAATP
TYILVPSASTPCKPQLQPLSPVDAAVVPVQMSSSPPGSLSDTASRAMSPPHTSISSRSVY
RYLFQFPHVCSTLQKYFNCKYCDFLYISDTSSSNESPPPQSSTVLDIPESVKDYIQKVKA
HMSLTCPAIEEGVSLTSHYVDVQVSQRETFRSGKNANRVLDKELIITGDTDRQNSLLGHS
QIFGDSNGHNLKRYIVLLGNAGMGKTTLIRKLCLDWSTDCILQFDFVFLLDGKTLALKNP
IYSLQTLLLNLSSFATSCTNPEEVYVQILAASKRVLIIFDGFDELRDYEVLLQTQEKDVI
TSLQKDSKAEAYTVRQLFSAILQRVLLPGCTLLLSTRPRGSANQLLRRADSFLEVCGFTP
TDVEAYLSQYFTDPALRATALDYLKNCSYLHLLCWNPGLCRLVCLVLEQSKTLDLLPRTL
TGLCHQVLRLKMEKHCKATDSQPDVKTQTPLQSEEETQTQISGNNQLNVCHKNTPVRKSR
ARVYTCTRSSNQRARRAKKQVTEGSEVDEEEMESVGREVDRTEERELLSQLSSLAWEGVK
ANSSILPKGRTLSARHKAFGLGTGLLLCHPLRKQLGFSSDEGGGGGEDPKDMGGGEKPDG
NRDGGKTEIENVDEGHILLWASPFLQSYLAGVHLSFSRTVSERTFLQNLPFHSGPKGRRR
PQREEFQLTQRFAVGLLFHNSAELQSLHSHTKAAFRDMVVNRQALVTKHLKSLSHGDLSP
AQVLEACHYVYEASFTSFGDGSRGNARLVAHLAASLPEVLSFHGVRLNPPDVFTVQNILE
GGGGFSLDLGDSGIGVSGLRALVGLNNVNSYRACIADVIALWEQLERSGEEGLLRGAVSK
FKIHPLKITQLRHVDHLAQLVNIHVHRRLSSSCTDSDSILADGVPAVRELHKLEFELGPD
RGPLGLSKLWELLPALRNLQHLDLENSKIGDEGSERLADALESLCSLEILNVSQNCIGDH
GLKKLATTLGYLPKLHCLSLYSNVISDEGAEGLAAILPHMASLTDLDVKYNKLTDVGAQC
LGASLRNCQKIKTLRMWNQCIPYGVFERLQQQDGRILWH
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacacaagcacgatgccctgatgcgaagttggaagtgaaaacagagcttagagtt
gcgtgcaggacgctggatttgtacaacttggagaatacggactcaagcttgacactggat
acacggggagccgctgactcaatgaaaggcctctgttattctgcatccgacagcataacg
acgactggagtgaacatggagcccttcagtgtctctggagcggcaggaaatgcttcacct
gttgaggcctgcgcagacaacatcacagccacctgtctggaggaccacctctgtgtccgt
tgtgtcgctgacgggacgacacacacaacagacgacctgatgtgtgtgagtggagacgca
cagtggggcacggatgctggatttgcagatgtggcacatttgtttttaacctgttctgca
aaagactctcctactaaagcacaggattactcatcttactcagaaatggatcagagcatg
acgttagacaacttagaacaaatcttaaggacagatttctacgaggaggatgaggatgag
gggagagtgggttcacactggggtgccaagatgcttgaagtagatcaggacccacatgac
tttggagatctaccagatgatttatctgaattcctcgacgatgaatacctattgggcaca
gacgttttctttggtgatccgtggtttaatcctgaggaactcaccaacttcaatgatgtc
gctgttctgccagagcagccgtgcaccggcggccaccagcaggggcagacggaccaattc
accggcatacaaaacaaaaggagaaaaagacagagagttcctcggtcacagcggtgcact
gatgagaagaaaccaccgtccacaccaaaaagacacagagcagcaggcgccgacgtggag
gcaaagctcagtcctgcagaggcagcgaacccaaccaccactcccacaagattccttcac
ctccaaccccccattcatttcatcaccatcccagactctaaaggatatcagctcatcccg
aatgtgaggctctcccctccggttattagacttcgactccccagtgcagccgctacaccc
acatacatattagttccttctgcctcaacaccctgcaaaccccaactgcagccgctctcc
ccggtggatgctgcagtggtgcctgtccaaatgagctcgtcaccaccaggatccctgtcg
gacaccgctagcagagcaatgtctccccctcatacctcgatctcctccagaagtgtgtac
cggtacctgtttcaatttcctcatgtgtgctcaacgctgcagaagtatttcaattgtaaa
tattgtgactttttgtatatttcagacacttcctcatctaacgaatcacctcctcctcag
tcttccactgtccttgatattccagagagtgtaaaagactacattcagaaagtcaaagcc
cacatgagtctaacatgcccagctatagaggagggtgttagtctgacctctcattacgtg
gatgtgcaagtgagccagagagagacctttcgctcgggaaagaacgcgaacagagtcctg
gacaaggagctcatcatcacgggagatacggatcgacaaaacagcttgttggggcatagt
cagatcttcggagactcaaatggacataacctcaaacgatacatagtgctgcttggcaat
gcgggcatgggaaaaaccaccctgatcaggaagctgtgccttgactggtccacagactgc
atcctacagtttgactttgtcttcttattagatggcaaaactctcgctttgaaaaacccc
atctacagccttcagacccttttattaaacctctcctcctttgccacttcttgcacgaac
cccgaggaagtgtacgtgcaaatccttgcggcctccaagcgcgtgctcatcattttcgac
ggctttgacgagctgcgagactacgaagttctactccagactcaagagaaagacgtgata
acatctctgcagaaagacagtaaagcggaggcctacactgtaagacagctattctctgcc
atccttcagagggtccttcttccaggatgcactcttctgctcagtacacgaccgaggggc
tcggccaaccagctcctccgtcgggcagacagctttctggaggtatgtggctttactccc
accgatgtagaagcatacttgtcccagtacttcactgacccggccctcagagccactgct
ttggactacttaaaaaactgcagctatctacatctcctctgctggaatcccggactatgt
cggttggtgtgcctggtgttggaacagtccaaaactttggacctcctaccgagaacttta
accgggctctgccatcaagtgcttcgtttgaaaatggaaaagcactgtaaggccacagac
tcacagcctgacgttaaaacacaaacacccctgcaatctgaagaagaaacacaaacacaa
atctcaggtaataatcaattgaacgtgtgtcacaaaaacactccagtccgtaagtccaga
gcacgagtttacacttgtactcgctcgagcaaccaaagagcgaggcgggcaaaaaagcag
gtgacagaggggagtgaagtggacgaggaggagatggagagtgtgggaagggaggtggat
agaacagaggagagagagctgctgtcccagctgagctctttggcgtgggagggggtcaaa
gccaactcgtccatccttcccaaggggcggaccttatctgcccgacacaaggcttttggc
ctcgggacaggactcctcctctgtcatcccctgaggaagcagctgggtttctcaagtgat
gaggggggaggaggaggagaggacccaaaagacatgggaggaggagagaaaccagacgga
aacagagacggagggaaaacagagattgaaaacgttgatgaaggccacatcctgttgtgg
gccagtcccttccttcagagctacttggcaggagtccacctttctttttccaggactgta
tcagagcgcactttcctccagaaccttcctttccactcaggtccgaagggacgtcgccgc
cctcaaagagaggaattccagctgactcagcgatttgccgtcggcctcctcttccacaac
agcgcagagctgcagagcctccactcacacacaaaggcagccttcagggatatggtggtc
aacagacaggctctagtgacaaagcacctcaaaagtctttctcacggtgacctgagtccc
gcccaggtcctggaggcgtgtcactatgtatatgaagcaagtttcacatcatttggtgat
gggagcagaggcaacgcacggttggtcgctcacctggcagcgagtcttccagaggtcttg
tcatttcacggagttcgactcaaccctccggacgtgttcactgtgcagaacatacttgaa
ggaggtggaggtttcagcttggatctgggggattctgggattggggtttctggactgaga
gcgctggtggggctcaacaacgtcaactcgtacagggcgtgcattgctgatgttatcgcc
ctatgggagcagctggagcggagtggggaggaggggctcctgcgaggggcggtgtccaag
ttcaagatccaccctctgaaaatcacacagctgcgtcatgtggaccacctggcacagctg
gtgaacatacatgtgcacaggaggctgtcgagcagttgcaccgattcagactccatcttg
gcagacggagtaccagctgtccgagagctacacaagctggagtttgagcttggcccagac
agaggtcccctgggtctctccaagctgtgggagctcctgccagctctacgtaacctacag
cacttagatctggagaacagtaagatcggggacgagggatccgagaggttggctgatgct
ttagagtcactctgttccctggagattctgaatgtgtctcagaattgcatcggagaccac
gggctgaagaaactggcaaccaccctcgggtatctgcccaaactgcactgtttgagtctc
tacagtaacgtgatttctgacgaaggggcagagggtttagcagctatcctcccacacatg
gcgtctctcactgaccttgatgtgaagtacaacaagctgacagacgtcggagcgcaatgc
ctcggagccagtctgagaaactgtcaaaaaataaagactttaaggatgtggaaccagtgt
attccatacggagtgtttgagcgtcttcagcagcaagacggtcgcatcctctggcattaa
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integrated database retrieval system
