Hippoglossus stenolepis (Pacific halibut): 118124006
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Entry
118124006 CDS
T08308
Symbol
smurf1
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF1 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04120
Ubiquitin mediated proteolysis
hsp04137
Mitophagy - animal
hsp04144
Endocytosis
hsp04340
Hedgehog signaling pathway
hsp04350
TGF-beta signaling pathway
hsp04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
118124006 (smurf1)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
118124006 (smurf1)
04350 TGF-beta signaling pathway
118124006 (smurf1)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
118124006 (smurf1)
04137 Mitophagy - animal
118124006 (smurf1)
09144 Cellular community - eukaryotes
04520 Adherens junction
118124006 (smurf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118124006 (smurf1)
04121 Ubiquitin system [BR:
hsp04121
]
118124006 (smurf1)
03029 Mitochondrial biogenesis [BR:
hsp03029
]
118124006 (smurf1)
Enzymes [BR:
hsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
118124006 (smurf1)
Membrane trafficking [BR:
hsp04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
118124006 (smurf1)
Autophagy
Mitophagy
Other mitophagy associated proteins
118124006 (smurf1)
Ubiquitin system [BR:
hsp04121
]
Ubiquitin ligases (E3)
HECT type E3
118124006 (smurf1)
Mitochondrial biogenesis [BR:
hsp03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
118124006 (smurf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
118124006
NCBI-ProteinID:
XP_035037669
LinkDB
All DBs
Position
16:complement(3871961..3885203)
Genome browser
AA seq
740 aa
AA seq
DB search
MSNPGTRRNGSSIKIRLTVLCAKNLAKKDFFRLPDPFAKVVVDGSGQCHSTDTVKSTLDP
KWNQHYDLYIGKTDSITISIWNHKKIHKRQGAGFLGCIRLLSNAISRLKDTGYQRLDLCK
LNPSDSDAVRGQIVVSLQTRDRIGSGGPVVDCRGLLENDGPVFEGCFSEEPLPYSDPTGA
AGGGNCRLDSPGQESRLQTQRIRGQDSRGHGHTPQNRPHGHQPPDLPEGYEQRTTVQGQV
YFLHTQTGVSTWHDPRIPRKCSSQGMDSEMDLASVSCEELGPLPVGWEVRSTVSGRIYFV
DHNNRTTQFTDPRLHTIISQQSQAKESSQTPQMDVGGEDGGGGGVGGGSGGGDGDVAARY
ERDLVHKLKLLRHELSLQQPQAGHCRIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRG
EEGLDYGGVAREWLYLLCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGR
VMGLAVFHGHYINGSFTLPFYKQLLGKPIQLNDLETTDPELHKSLVWILENDITSVLDHT
FCVEHNAFGKFSQHELKPNGRNIPVTEDNKKEYVRLYVNWRFMRGIEAQFLALQKGFSEL
IPQHLLKPFDHKELELIIGGLGKIDLADWKTNTRLKHCTSESNVVRWFWQAVEAFSEERR
GRLLQFVTGSTRVPLQGFKALQGSAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESY
EKLYEKLLTAVEETCGFAVE
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcctgggaccaggaggaacgggtccagcattaaaatccgactgacagtatta
tgtgccaagaacctcgcaaagaaagacttctttcgtctgccagatccatttgccaaagtt
gtggtggacggatcaggtcaatgccactcgacagacacagtcaagagcacactggatccc
aaatggaatcagcactatgacctctacattggaaagacagactccatcaccatcagtata
tggaaccacaaaaagatccataaacgacagggggcgggcttcctcggctgcatacgactt
ctttctaatgctatcagcaggctaaaagacacaggctaccagcgtctagatctatgtaag
ctcaacccctcggacagcgacgcggtgcgggggcagattgttgtgagcttacagacacga
gaccgcatcggcagcggaggccccgtggtggactgcagaggactgttggaaaatgatggg
cctgtgtttgagggatgtttcagtgaagaaccgctgccctactctgaccccactggtgcg
gcggggggtgggaattgccggcttgactcacccggtcaggagagccgtcttcagacccag
cgaatcagagggcaggactccagaggccacggccacacccctcagaacagacctcacggg
caccagccgccagatctacccgaaggatatgagcagcgaacaacggtgcagggccaggtg
tatttcctacacacacagacaggtgtcagtacctggcacgaccctcggataccacggaaa
tgttccagtcaaggcatggattcagaaatggacctggccagtgtgagctgcgaagagctt
ggtccgttgccggtgggctgggaggtccgaagcactgtgtccggtcggatctactttgtg
gaccacaacaacagaaccacacagttcacagatccacgcctacacaccatcatcagccag
caatcccaagcaaaggaatcctcccaaaccccccagatggatgtggggggcgaggatgga
ggaggtggcggagtaggcggcggcagtggaggaggagatggagacgtggcagcacgctac
gagagagacttggtccataagctgaagctgctccggcacgagctgtcattgcagcagcca
caagcgggacactgtcgtatagaggtgtcccgagaggagatctttgaggagtcatatcgg
caaataatgaagatgaggcccaaagacctgaagaagcgtctcatggtgaagttcagggga
gaggagggtctggactacggtggggtggccagggagtggctgtacctgctttgtcatgaa
atgttgaacccatactacggcctgttccaatactcgacagacaatatctacacgctacaa
atcaaccctgactcctccatcaaccccgaccacttgtcatatttccactttgtgggtcgt
gtgatgggccttgcagttttccatggtcactacatcaatgggagtttcacgctgcccttc
tacaaacagctgctgggcaaacccatccagctcaacgacctggagaccaccgacccggag
ttgcacaagagtctcgtctggatattagagaacgacatcacttcggtcctcgaccacacg
ttctgcgtggagcacaatgcctttggaaagttttcacaacatgaactcaagcccaatggg
cgtaatatccccgtcaccgaggacaacaagaaagaatatgtcagactttacgtgaactgg
aggttcatgcgaggaatcgaagcccagtttctggctctacagaagggattcagtgagctc
atcccccaacacctcctcaaaccgtttgaccataaagaacttgagttgatcatcggtgga
ttggggaagatcgaccttgcagactggaagacaaacacccggctgaagcactgcacaagt
gaaagcaatgtggttcggtggttctggcaggcggtggaggccttcagtgaggagaggaga
ggacgcctgctgcagttcgtcaccggctccaccagggtcccgctccagggtttcaaagca
ctgcagggttctgcaggaccaaggctcttcaccatccatttgatagacgccaacacagac
aacctgcccaaggcccacacatgttttaacaggatagacatcccaccctacgagtcttat
gagaaactttacgagaaactgctgacggctgtggaggagacctgcggcttcgctgtggag
tga
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