Hippoglossus stenolepis (Pacific halibut): 118124096
Help
Entry
118124096 CDS
T08308
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
118124096
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
hsp04054
]
118124096
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118124096
Pattern recognition receptors [BR:
hsp04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
118124096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_19
AAA_22
Hydantoinase_B
PhoH
NAD_binding_9
Motif
Other DBs
NCBI-GeneID:
118124096
NCBI-ProteinID:
XP_035037797
LinkDB
All DBs
Position
16:14314842..14320161
Genome browser
AA seq
681 aa
AA seq
DB search
MADFGLYSYQQEVVERALQGENVIIWLPTGGGKTRAAVYVAKRHLETTQHAKVVVLVNKV
HLVDQHYTKEFKPHLGCDYTLVPVSGESDLKDLFGKVVQDSDVVICTAQILYNALTNSEE
TKHVELSDITLLIVDECHHTHKKSVYNQIMSFYMEKKLNGERPLPQILGLTASPGTGGAR
ILEKAVEHVLQICANLDSSIVSTKNYAPELKKKVPRPIKTFDIVENRPEDPFGDDLKRMM
QRIQEHMNLPADFRLRECGTQEYEADVVILEQRGVRENNRKLAQCALHLRQYNDALLIND
TLRMMDAYSSLEEFYISKSKTAIDKTDLFLVGIFQENRADLRKFARDSRYENPKMAKLES
VLLKQFGSGVQSKGILFSKTRKSIHCLKDWVLHNRALQEAGVKADVLTGAGNGITYMTQS
EQADTICHFRQGILNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARAQDSK
YSVVALKGGREVRRELTNEYLEELTAKAIAQVQDMSPKEFRGKITEIQTETVNKSRIKDS
SEMQKRSLYTASSIQLLCRNCFKPVASGSDIKLIDNVHHVNVNPAFKKHYKVGGQLMLPK
SFEDWEPGRIISCNNGKCSQQWGFEMKYKDIALLPNLAIKHLVLQTPDGRVTKKKWKDVP
FTLDNFNFEEYCQENFPDLFD
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggcagacttcggactgtattcataccagcaggaagtggtggaaagggctcttcaggga
gagaacgtgatcatctggctgccgaccggaggcggaaagacgcgagctgctgtgtacgtg
gccaagagacacctggaaaccacacagcacgccaaggtggtggtcctggtcaacaaggtt
caccttgtagaccaacattacaccaaagagttcaagcctcatctgggctgcgactacacc
ctggtgccagtgagtggagagagcgacttgaaggacctcttcggaaaagtggtgcaggac
tcggacgtggtcatctgcacagcacagatcttgtacaacgctctgaccaacagcgaggaa
accaaacatgttgagctctcggatatcactctactgatagttgatgagtgtcaccacacc
cacaagaagtcggtctacaaccagatcatgagtttctacatggagaaaaagttgaatgga
gagcgtccgttgccgcagatcctgggtctcactgcatcgccagggacggggggcgctagg
atcctggagaaggccgtggagcacgtcctacagatttgtgccaacctggactcatccata
gtttcaaccaagaactatgcccctgagttgaagaagaaggtgccgagacccatcaagaca
tttgacatcgtcgagaacaggcctgaggatccgtttggtgatgatctgaagcggatgatg
cagaggatccaagagcacatgaacttacctgcagacttcagactgagagagtgtggcacg
caggagtacgaggcagatgtggtgattttagagcagcgaggggtaagagagaacaacaga
aagctcgcacaatgtgctctccacctcagacagtacaacgatgccctgctcatcaacgat
accctgcgtatgatggatgcttacagcagcctggaggagttctacatctctaagtccaaa
acagcaatcgacaaaacagacctcttcctggtgggaattttccaagagaatcgggcggat
ttgaggaaatttgcaagagattctcgctacgagaacccaaagatggccaaacttgagagc
gttctgctgaaacagttcggttcgggtgtgcagtcaaaggggatcctcttcagcaaaaca
cgtaaaagcatccactgcctgaaagattgggtcctccacaacagagccttacaggaagct
ggcgtcaaggcagacgtcctgaccggggctggcaacggcatcacttacatgacacagagc
gagcaggccgacacgatctgccatttccgacagggcattctcaacctgctcatctccacc
agcgtggctgaggagggcctcgacattcctgaatgcaacctggtggtgcgctacggcctg
cttacaaatgagatcgcccagcagcaggccagcggacgtgccagagcgcaagacagcaag
tattcagtggtcgccttgaaaggggggcgggaggtacgcagagagctcaccaacgaatat
ctggaggagctgactgcaaaagccatcgctcaggtccaagatatgagccccaaagagttt
cgcggaaagataactgagatacagacagaaactgtcaataaaagtagaattaaagacagc
agtgaaatgcagaagaggagtctctacaccgcttccagtatccagctcctgtgtcgaaac
tgtttcaagcctgtggcctctggcagtgacattaaactcatcgacaatgtgcaccatgtc
aatgtcaatccggcctttaagaaacactacaaagtgggagggcagttgatgctaccaaag
agttttgaggactgggagcctgggcggattatcagctgcaataacggcaaatgcagccag
caatggggatttgagatgaagtacaaggacatcgccctgctgcccaatctggccattaag
catttggtcctgcagacacctgatggcagggtgactaagaagaagtggaaggatgtccct
ttcactttggacaacttcaactttgaagaatactgccaagaaaacttccctgacctcttc
gactga
DBGET
integrated database retrieval system
