Hippoglossus stenolepis (Pacific halibut): 118124325
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Entry
118124325 CDS
T08308
Symbol
cspg5b
Name
(RefSeq) chondroitin sulfate proteoglycan 5b isoform X1
KO
K08116
chondroitin sulfate proteoglycan 5
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hsp00535
]
118124325 (cspg5b)
Proteoglycans [BR:
hsp00535
]
Cell surface proteoglycans
Others
118124325 (cspg5b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Neural_ProG_Cyt
Motif
Other DBs
NCBI-GeneID:
118124325
NCBI-ProteinID:
XP_035037874
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Position
17:complement(12005239..12019713)
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AA seq
691 aa
AA seq
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MPRGDGGVGAWQVLMTISLVIAPLSAHGRHSLTRRHHHHNQSSLNKEALNTRMMLSDDSA
ERDHLIGAGLGAKLPLSSTKHHHSRKHVHLDFVEEDPPVVEELTAGGAGPDQPGNPLTDD
VITVAFHSPAPDVVPSDALDLAKVPKPQKQKGADPTAWTLSDFYDYLAPDDDLSALDTTP
EPEPTPSPPADMEDENPRLSGSPAVPDYVKPKVESGPSSPVPPMPGPDKDDEVGVGGAMG
TDGCRLGFVRSGPGVCVSQCDTETNLCFNGGVCTVVAGMGAFCRCNVQDYIWNKGTRCDW
AVTEFQVICAVVGVSSFVLLLLFMIIVFFAKRLHRLKNENRRLRKRSKYRPQSSEPQTDG
LSVSTTADGSQPNVRKLCDTPPPAPQAHTHNLAYYDNIICQRPPPTSYTWEYTPRNPYNH
IQDDPQKKDDPGKSPQPKEEGSMNILNSHSPKHENNRPTSVAHDHDHTPNNTEENAEDGV
TIGLEVLLPKEAKLHSETSSPLQYDVFLYKVANNGDTDSPSHAPPSHSANSYSTFHHIPK
SPKSPKKPKSPKVSKSSKSPKHTKEHPPINHEPLSVRHSSPGRHLSTAHYPPCSRHSAPE
CYSSPSCHPSSHHSPSQYKCMPTSASTPPQMRRPRGRSHGPDSEHSGTGREHHSGHIRPS
PSSPHLTQPSPSPSGRVKYSPVSTRSLPPLS
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcggggacggaggtgtgggggcctggcaggtgctgatgaccatctccctggtc
atcgcccccctgtctgcacacgggaggcattcgctgaccaggcgccatcatcaccacaac
caatcatctctcaacaaggaggccttgaacaccaggatgatgctgagtgatgactcggcg
gagagagaccacctgatcggagcaggtctcggggccaaactccctcttagctccaccaaa
catcaccattctcgcaaacacgtccacctagacttcgtagaggaggacccacctgtcgtg
gaggagctcactgccggtggtgcaggtccagaccagcctggaaaccccctgaccgatgac
gtcatcaccgtggcgttccacagcccggcgccggatgttgtgccctctgacgctttggat
ttggcaaaagtccccaaaccccagaagcagaaaggggcggaccccaccgcatggacgctg
tctgacttttacgactaccttgcacctgacgatgacctctcagcgttggatacaaccccg
gagcccgagcccacgccttcacccccagccgacatggaggatgagaatccgcgcctttct
ggttctcctgctgtccctgactatgtgaagcctaaagtggagagtgggccctcctcacct
gttcctccaatgccagggccagataaggacgatgaggtcggcgtgggtggtgccatgggg
actgacggctgcaggctgggctttgtccgctctggaccaggggtgtgtgtgtctcagtgt
gacactgaaaccaatttatgcttcaatggaggggtgtgcaccgtggtggcaggaatgggg
gctttctgcaggtgtaacgtacaggactacatctggaacaaaggcacgcgctgtgattgg
gcggtcacagagtttcaggtgatttgcgcggtggtgggcgtgtcctcctttgtgctcctc
ctcctcttcatgatcatcgtattctttgccaagaggctgcaccgcctcaagaacgagaac
aggcgccttcgcaaacgcagtaagtaccggccgcagagcagcgagccacagacggacggc
ctctcggtttccacgacggccgacggctcgcagccaaatgtaaggaaactgtgcgacacc
cctccgcccgctccccaagctcacactcacaacctggcgtactatgacaacattatctgt
cagaggccaccaccaaccagctatacctgggagtatacacccagaaacccttataaccac
attcaggatgacccccagaagaaggacgacccagggaagtccccgcagcccaaggaagag
ggctctatgaacatcctcaactctcattcccccaagcatgagaacaatcgcccgacctcc
gtcgctcacgaccacgaccacactcccaacaacacagaggagaacgccgaggatggagtc
actatcggcctggaagtgctcctgcccaaagaggccaagctccactcagagaccagctcg
ccccttcagtacgacgtcttcctctacaaggtcgccaacaatggagacaccgactccccc
agccacgcccctccctctcacagtgccaactcttactccacctttcaccacatccccaaa
tcgcccaaatcgcccaagaagcccaagtcgcccaaggtgtcgaagtcatccaaatcaccc
aaacacaccaaggagcatccacccatcaaccatgagcccttgtctgtgaggcactcctcg
cctggccgtcacctctccaccgctcactacccgccatgctctcgtcactctgcacccgag
tgctactcttcccccagctgccacccatcctcccaccactctccctcccagtacaaatgc
atgcccacatctgcctccaccccgccccagatgcgcaggcccagaggtcgatctcacggt
cccgactcggagcactcggggactgggagagagcaccacagcggacatattcgtccgtct
ccatcctcgcctcatcttacccagccttctccatcaccatcaggcagggtgaagtacagc
ccggtcagcacccgatccctgccaccgctctcctga
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