Hippoglossus stenolepis (Pacific halibut): 118124398
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Entry
118124398 CDS
T08308
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
118124398
NCBI-ProteinID:
XP_035038016
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Position
17:complement(18232585..18285897)
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AA seq
1622 aa
AA seq
DB search
MELRVGFRISLVLVILALTLSREGVEAQRAGCKNVHYDLAFILDTSSSVGKENFEKIRQF
VANLVESFDVATDKTRVAVVRYSDKPTTEFGLGRHRTLEDVKRAARNIRYLGGNTMTGEA
ISYTTTNIFTEQNGARPAARGIQRVAILLTDGRSQDYVLEPSKEAAKAGIRMFAVGIGEA
LKEELEEIAAEPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPNMKVQPDRFKPNSTSY
GLEEVPGFDLMEFFSVRDILGTRVDEGQSSYVRLGTMPIVQQTEDVFPQGLPDEYAFVTT
FKFRKTSRREDWYLWQVFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNPEVDN
LFDRNWHKIALSVEAKAVSLYLDCKHIQTLPIEDREDIDIQGKTVIGKRLYDSVPIDFDL
QRMMVYCDSKHAELETCCDLPNGPCPKKVVTEAPPMEIPTPTPTVVEQQRGPQVNCSCSA
GGKGEIGSPGVAGPMGEKGETGPVGAIGPTGSRGEKGETGRVISVKGGRGDKGDTGRIGL
TGAPGQKGEKGLGGVPGIDGLSGDKGDKGESGQAGAPGLAGPAGLKGIQGDSGDSGTPGP
KGVIGESGIQGENGTPGTAGLAGVDGLPGKPGFPGKNGFRGLVGVPGPSGVKGNKGERGL
PGIPGDVVQNDGLRGENGVAGPPGPPGAEGPPGPSGPPGVVGLPGEPGEFGQRGKKGENG
LPGVDGLPGPPGPQGPSGPTGSRGHTGPPGLPGEIGFSGKPGESGKSGLPGKDGLDGLQG
NDGATGPRGERGADGFSGKPGTKGEDGPPGPRGPSGERGEGGSPGQPGADGGRGDRGVPG
ERGMNGPFGPKGEKGDKGEVGTMGPPGAPGDVANVIPEPGEPGIPGENGQKGEQGKPGEV
GQRGLPGEQGFKGPAGPAGPNGDTGPTGETGRVGDPGPPGLAGLQGPRGLPGSVGIPGIL
GPPGPAGQRGDKGEVGKPGQSGPTGTPGEPGLTGPPGPPGKGKDGQSGEPGPQGIQGPQG
PKGQPGSRGESGAPGDRGTPGEGKVGQVGSQGNNGEPGPAGLRGLPGVAGPQGPAGHNGL
PGRPGEKGSAGEPGKAADLSDLNLKDVCSDCPAGPPGAPGLPGVLGDKGHPGLPGKNGQD
GYQGPAGLVGPQGPPGADGGKGIKGDRGPGGAPGDKGEKGHPGPPGHPGPSGLMGTAGND
GQPGTVGPPGPPGEKGKEGLKGIQGPPGLPGLVGLPGNMGKDGRPGETGENGKQGEPGPQ
GNSGLRGLPGFKGHRGEPGAPGPKGEDGKSGLPGRDGKSGKEGSRGSPGPEGVAGHRGES
GKPGEPGPSGKAGLPGTPGLRGDKGEAGNPGLPGFSGPKGPAGPHGPIGPEGKQGTPGRI
GDRGLKGEKGDSGVKGDKGHGGDSGMPGNPGPPGRKGHTGMMGMSGPPGELGSPGPQGSS
GNPGLPGQRGESVSLEQMRRLIQEELSKQLDAKLAYIMAQIQPAHVKSTVGRPGPAGTPG
KDGNSGRPGPPGEPGMPGQNGGEGPRGPLGPKGEKGGRGEKGESGIGERGEHGIPGPIGP
AGLPGYGKDGGPGQAGSQGEPGNPGPHGQPGPPGPTGQCDPTQCAYYASLAHRPHTKNVK
GN
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atggaattacgagtgggatttcgaatcagcttggtcctggtcatcctggccttgactctg
tcccgtgagggagtggaagcacagagggcagggtgtaaaaatgtccactatgacctggcc
tttatcctggatacctcatccagtgttggaaaagagaactttgaaaagatcagacaattt
gtagccaacctggtggagtctttcgatgtggcaacagacaagacacgagtagcggtggtt
cgctacagtgacaaacccacaaccgagtttggcctgggaagacacaggacccttgaagat
gtgaagcgagctgcccgtaacatacgctacctggggggaaatacaatgaccggggaggct
atcagctacaccaccactaacatcttcacagagcagaacggagcgaggcctgcagccaga
ggcattcagcgggtggccatccttctcacagatggacgaagccaggattatgttctggag
ccctccaaggaggctgccaaagccggcatcaggatgtttgccgtgggcatcggggaggcg
ctaaaggaagagctcgaggaaatcgctgctgagcccaaaaatgcccatgtcttccatgtg
acggactttaatgccattgacaagatcaggggccggctgaggaggcggctgtgcgagaat
gtcctgtgtccgaacatgaaggttcaacctgatcgctttaagcccaacagcaccagttat
ggtcttgaagaggttccagggttcgacctgatggagttcttcagtgtgagagatatcctg
ggaaccagagttgatgaaggccagagttcttatgttcgccttggcaccatgcccattgta
cagcagacagaagacgtgtttcctcaagggttaccggatgaatacgcctttgtgacgaca
ttcaaatttaggaaaacttcaagacgtgaagactggtacctctggcaggttttcgacaaa
tatggaatcccacaggtgtccatccgtctggacggtgagaacaaggcggtggagtacaac
gctgtcgggctgacaaaagatgctgtcagagccgtgttcaagaaccctgaagttgacaac
ctgttcgatcgcaactggcacaagattgccctcagtgtggaggccaaggctgtgtctcta
tacctggactgcaaacacatccagactctgcccatcgaagacagagaggacattgatatc
caagggaagacagtgattggaaagaggctgtatgacagcgtgccaattgactttgacctc
caaaggatgatggtctattgtgattccaagcacgcagagctggaaacctgctgtgatcta
cccaatggaccttgccctaagaaagtggtgacagaggctccccctatggagatccccact
ccgaccccgactgtcgtagagcaacaaagaggcccgcaagtcaactgctcatgttctgca
ggagggaagggagagatcggttcacctggtgttgcaggtcccatgggtgaaaagggtgaa
actggccctgtgggcgccatcggaccgacgggcagcagaggagaaaaaggagaaactggc
agagtaatctctgtcaaaggtggcagaggtgacaagggtgatacaggcagaatagggttg
acaggtgctcctggacaaaaaggagagaagggccttggtggtgtgccaggtatcgatggc
ttatctggagacaaaggagacaaaggtgaatcaggacaggctggtgctccagggttggcg
ggtccagctggactaaagggaattcaaggagactcaggagattccggcactcccggacca
aaaggtgtcattggtgaatcaggcatacaaggtgaaaatggaactccagggacagcgggc
ctggcaggtgtggatggattaccaggaaaacctggctttcctggtaaaaatggtttcaga
ggattggttggtgtacccgggccgagcggagttaaaggcaacaagggggagagaggcctt
cctggaatacctggggatgtggttcaaaatgatggtttacggggtgaaaacggagttgct
ggacctcctgggcctccaggagctgagggccccccaggaccttctggtcctcctggtgtg
gtaggtctgcccggggagcctggagagtttggccaaaggggcaagaagggtgaaaatgga
ttacctggagttgatggccttcctggacctcctggtcctcagggtccatctgggccaaca
ggaagccgaggacatactggacctcctggtcttcctggtgaaattggattttcaggcaaa
ccaggggagtctgggaagtctggtcttcctggtaaagatggtctcgacggtcttcaggga
aatgatggtgccacggggcccaggggagagcgcggagcagatggtttttctggaaagcct
ggaactaagggggaagacggcccacctggaccaagaggaccttcaggggagagaggagaa
ggtggttcccctggacaaccaggagctgatggaggaagaggagataggggcgtcccggga
gaaagaggaatgaatggaccgtttgggccaaaaggtgaaaagggagacaagggtgaagtg
ggaacgatgggaccacccggcgctccaggagatgtggcaaatgtcatccctgagcctggt
gaacctggaatacctggagaaaacggccagaaaggagaacaaggcaaaccaggagaagtc
ggccaacgaggattacctggtgaacaaggtttcaagggaccagctggaccagcgggtcca
aatggcgacaccggacctacaggagagacgggacgtgttggagaccccggtccacctggc
ttagctggtcttcaaggtcctcgtggattaccagggagcgtgggcatacctgggatcctt
gggcctcctggtccagctggacagaggggagacaagggtgaagtgggtaagccaggacaa
tcaggccccacaggcacacctggagagcctggcttgactggacctcctggaccgccagga
aagggcaaggacgggcaaagtggagaaccaggaccacagggaattcaaggaccccaaggg
ccaaagggtcaaccaggatcccgaggagaatcgggggcaccaggggacaggggcactcca
ggagaaggcaaagtgggacaagtggggtcacaaggaaataatggcgagcctggacctgct
ggcttgaggggtctacctggagttgctggtcctcagggtccagcaggacacaacggttta
ccaggaaggccaggggagaagggatcagccggagagcctggaaaggcagcagacctctct
gacctaaatctgaaggatgtctgctcagactgccccgcaggtccacccggagcgcccggt
cttccaggagtccttggagataaaggacacccgggtcttccggggaaaaatggtcaagat
ggttaccaaggcccagcagggctagtgggacctcaaggaccccccggagccgatggagga
aagggtataaaaggtgatcgaggacctggtggagcacctggagacaaaggggaaaagggt
cacccaggaccccctggtcatccaggtccttctggcttgatgggtacagcgggtaatgat
ggacagccaggcaccgtcggacccccagggccccctggagaaaagggcaaagagggtctc
aaaggaatccagggaccaccaggtcttcctggcttggtgggactgcctggaaacatggga
aaggatggcagaccaggtgaaacaggagaaaatggcaagcagggtgaacctgggccacaa
ggaaactctgggctcaggggactcccgggctttaaaggccacagaggagaacctggagct
ccaggacccaagggagaagatggaaagtctggattacctggacgtgacggcaaatctgga
aaggagggctccaggggatcacccggtccggaaggagttgctggacacagaggagagtcg
ggcaagccaggtgaaccaggaccatcaggaaaagcgggtctcccaggaactccaggtctc
aggggagacaagggagaggccggcaacccaggattaccaggatttagtggacccaaaggc
cctgctggtccacatggtccgattggcccagagggaaagcaggggacgccgggcagaatt
ggtgatcgtggcctgaaaggtgaaaagggcgactcaggtgtgaagggagataaaggacat
ggaggagattcaggtatgcctggaaaccctggacccccaggcagaaagggccacacagga
atgatgggcatgtcaggaccaccaggagaactagggtctcctggaccacaaggatcttca
ggaaaccctggtcttccaggccagaggggagagtctgtgtcactggagcagatgagacgg
ctcatccaggaggagctatcaaaacaattagatgccaaactagcttacatcatggctcag
atccagccagcccatgtaaagagtactgtcggccgtcctggacctgcgggcactccaggt
aaagatggcaactccggccgacctggcccccctggcgagcctggcatgcctggacagaat
ggaggagaaggacccagaggacccttgggccctaaaggtgagaaaggcggaagaggagag
aagggagaatctggtattggtgaaagaggagagcatggcattcctggcccaatcggtccc
gccggcctacctggctacggtaaagatggaggcccaggacaagcgggatcccaaggagaa
cctggaaaccccggcccccacggtcagcctggacctccgggtcctactggccaatgtgat
cccacccaatgtgcctattacgccagcctggcacatagaccccacaccaaaaacgtcaag
gggaattaa
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