KEGG   Hippoglossus stenolepis (Pacific halibut): 118124545
Entry
118124545         CDS       T08308                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
hsp  Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hsp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118124545 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hsp03041]
    118124545 (snrnp40)
Spliceosome [BR:hsp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    118124545 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    118124545 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C NBCH_WD40 Beta-prop_EML Beta-prop_EIPR1 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 Beta-prop_IFT140_2nd WDR54 Beta-prop_VPS8 WD40_like
Other DBs
NCBI-GeneID: 118124545
NCBI-ProteinID: XP_035038397
LinkDB
Position
17:11191758..11222264
AA seq 347 aa
MIEQKKRAADMAVVPAAAKRPRTELVAAAQSQQLVAMGPPRSSSLQAPIMLMSGHEGEVY
CCKFHPNGATLASSGFDRLILMWNVYGDCENYATLKGHSGAVMELHYNTDGSMLFSASTD
KTVGVWDSETGERMKRLKGHTSFVNTCYPARRGPQLVCTGSDDGTVKLWDIRKKGAIHTF
QNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLIYNMHGHGDSVTGLALSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSSDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVAFHPEESIVMSGSSDKRLYIGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgatcgagcagaagaaacgagcggcggacatggcggtggttccggccgcggcgaagcgg
cccaggacggagctggtggcggcggcgcagtcccagcaactcgtggcgatggggccccca
cggagctccagcctgcaggctcccatcatgctgatgtctggccacgagggcgaggtgtac
tgctgcaagtttcatcccaacggagccacgctggcttcctctggatttgacagactcata
ctgatgtggaatgtgtacggagattgtgaaaattatgccactctgaagggccacagcgga
gcagtgatggagctgcactacaacacagatggcagcatgctcttctcagcgagcacagac
aagactgtaggtgtgtgggacagtgagacaggtgagaggatgaagcgtctgaagggccac
acctccttcgttaacacctgctacccagcccgccgagggccccagcttgtctgcaccggc
agcgacgacgggacagtgaagctgtgggacattcgtaagaagggggcgatccacacgttc
cagaacacctatcaggtgttggctgtcaccttcaacgacaccagtgatcagatactgtca
ggaggcatcgacaacgacatcaaggtgtgggacctgaggcagaacaagctgatctacaat
atgcacggccatggtgactcagtaactggactcgctctgagctcggagggatcgtacctt
ctctccaactccatggacaacacagtgcgaatttgggatgtccgaccatttgcgcccaag
gagagatgtgtgaagatcttccagggcaatgttcacaactttgagaagaatttgctgagg
tgctcctggtctagtgatggcagtaagatcgctgcaggttcagctgacagatttgtgtat
atttgggacaccacatcacgcagaatcctgtacaagctgccgggccacgctggctccgtc
aatgaagtggccttccacccggaggagtctatagtgatgtctggctccagcgataaacga
ctctacatcggtgaaattcagtag

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