Hippoglossus stenolepis (Pacific halibut): 118124563
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Entry
118124563 CDS
T08308
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118124563 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118124563 (smarcc1b)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118124563 (smarcc1b)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118124563 (smarcc1b)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118124563 (smarcc1b)
PBAF complex
118124563 (smarcc1b)
GBAF(ncBAF) complex
118124563 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
PAT1
Motif
Other DBs
NCBI-GeneID:
118124563
NCBI-ProteinID:
XP_035038429
LinkDB
All DBs
Position
17:complement(12022648..12030345)
Genome browser
AA seq
957 aa
AA seq
DB search
MATMSGGTNLGVPGTSQTSSGATAHRKKDSSPSARFWESPDTLAQLEVVRLWVGKHYKKY
VLVDAPSCQALAAVTLQLLQFQEDAFGRQATNPALTKLHAHCFLDLRPGGGLCHILGTAY
KFKAEQGWRRFDLQNPSRTERNVEMFSSIKGALIQHNCMSLPVVYLDPTVDQELASRLTN
IITKRQGTLTEDRALASHNIYPLPASTEEDEWMRPVMQKDKHILVHWGMHPDSYDSWLSS
SDVQGEVEDAPHPERPWRVHAGWVVDTDVFNEWMNEEDYCVDERNVPIILRRRIHLHDEQ
DSKSTPSKKRRRSPSPPSSEGRKKGKKGRRRGQQEEESEEDLTKDMEDPTPVPNMEEVIL
PKNVNLKKDSENTPVKGGTMADLDEQEDDFPGREEEEGRGEVPRLSEGEENITEQTHHII
VPSYTSWFNNNSIHLIEKRALPEFFNGKNKSKSPEIYLAYRNFMIDTYRLNPQEYLSSTS
CRRNLTGDVCAVMRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQ
HKPLQVTASQHMLFFPEKSKEKPTDCQNFGLRSDIYTKKHPKTKGTNAGREWTEQETLLL
LEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSVSLGPLAFQPVPFSQS
ENPVMSTVAFLASVVDPRVASSAAKAALEEFSRVQEDSADKISEISNQSEKTELMDAEKM
ESNSTCHQVAGRTDGNVELSVAIVEGDAVKRENAENILAEETDGRGDDDESVGRREVDGD
EGRRVMELELVEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKL
RHFEELETIMDREKEALEQQRQQLLSERQTFHTEQLKQAEMKVRQQREQQGQQGQQGQPG
FTMQNSGQAVPNRMMPSGGNPQPMAPRHPGAPNGMYPSSQPDGITPAQPGPPASTHS
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggccacaatgtccggaggaacaaacctcggcgttcctgggacgagccagaccagctcc
ggggccaccgcgcatcggaagaaagacagcagcccgtccgcccggttctgggagagcccg
gacactttagcccagctggaggtggtgcggctgtgggtcgggaagcactacaaaaagtat
gtgttggtggatgctccatcatgccaggccctggcagcagtcactttacagctgctccag
ttccaggaggatgcctttggccgacaagctaccaatcctgctctcaccaagctgcatgca
cactgcttcctggacttgcggccagggggaggactctgccacatccttggaactgcctac
aaattcaaggcagagcaaggctggcgaaggtttgatttacagaatccgtcaagaacagag
aggaatgtggagatgtttagttcaattaaaggggcgctcatccagcacaactgtatgtca
ctgcctgtggtatatctggaccccacagttgatcaggagttggcaagcagactgaccaat
atcatcacaaagcgccagggtacactcactgaggaccgagcgctcgccagtcacaacatc
taccccttacctgcctccacagaggaagatgaatggatgcgtcctgtcatgcagaaagac
aagcatatcttggtacattggggcatgcaccctgacagttatgacagctggctgtcctca
agtgatgttcaaggagaggttgaagatgcaccacatccagagagaccatggagggttcat
gctggttgggttgtggacacagatgttttcaacgagtggatgaatgaagaagactattgt
gtggatgaaaggaatgtgccaataatccttcgccggcgtattcacctccatgatgagcag
gactcaaagtccaccccatccaaaaagagaaggcgatccccctcccctccctcctctgaa
ggcaggaagaaaggaaagaaggggaggaggcgtggacaacaggaggaagagtcagaagag
gacctgaccaaagacatggaggaccctacacctgttcctaacatggaggaggtcatacta
cccaagaatgtcaacctgaagaaagacagtgagaacactcctgtaaaaggaggcaccatg
gcggacctggatgaacaagaggatgattttccaggaagggaggaagaagagggacgagga
gaggtgccgcggttatcagagggagaagaaaatatcacagaacaaacccatcacataata
gtaccaagctacacatcttggttcaataacaacagcattcatttaatagagaaacgggct
ctccctgaattctttaacggaaagaacaagtccaaatctccagaaatttacttggcgtac
cgcaacttcatgatcgacacgtaccggctcaacccccaggaatatctcagttcaacgtcc
tgtagacgcaacctcactggagacgtctgtgctgtcatgagggttcatgcgtttttggag
cagtggggtttgattaactaccaagtggatgcagagagcagacccctccccatgggaccc
cctcccacgcctcatttcaacgtactggctgacacaccgtccgggctggcccccctacaa
cacaaacccctgcaggtgacagcctcgcagcatatgttgtttttcccagaaaagagcaaa
gagaagccgacagactgtcagaactttggtctgcgcagcgacatctacaccaagaaacac
cctaagaccaaaggaacgaatgcaggaagggaatggacagagcaagagacactcttgcta
ttagaggccttagaggtttacagagatgactggaacaaagtatccgagcatgtgggatcc
agaacgcaggacgagtgtatactccactttctccgtctgccgatagaagacccttatcta
gaagactcctcagtctctctgggtccactggcgttccaacccgtgcctttcagccaatcg
gagaaccccgttatgagcactgtggccttcctggcatctgtggtggacccgcgggtggca
tcgtctgcagctaaggcggcactggaggagttttcccgagtgcaggaggactcagcggat
aagatctctgaaatatccaatcagtctgaaaaaacagaattaatggatgcagagaaaatg
gagtcaaactccacttgccaccaggttgctggaaggacggatgggaatgtggagctcagt
gtggcaatagtggagggagatgcagtcaaaagggaaaatgcagaaaatatacttgcagag
gagacagatggaaggggagatgacgacgagagtgtagggcggcgagaggtggacggggac
gaggggaggagagtgatggagctggagctggtggagggcaacgttgccacggcagcagcg
gctgctctggcctcggctgccacaaaggcaaagcacttggcagcagtggaagagcggaag
atcaagtccctagtggcgcttctggtggagactcagatgaagaagctggagatcaagctg
agacactttgaggagctggagaccatcatggaccgagagaaagaggctctggagcagcag
cggcagcagcttctctcagagagacagactttccacacggagcagctcaaacaggcggag
atgaaggtccgccagcagagggagcagcaggggcagcaggggcagcaggggcagccagga
ttcacaatgcagaattcaggccaggccgtgcccaacaggatgatgcccagtggaggcaat
ccccagcccatggccccccgacaccctggagcacccaatggcatgtacccatcctcacag
cctgatgggatcacaccagctcagcccgggcctccagcttccacgcacagctga
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